Simulating a burnt-bridges DNA motor with a coarse-grained DNA model. - Petr Sulc; Thomas E. Ouldridge; Flavio Romano; Jonathan P. K. Doye; Ard A. Louis (Nat. Comput., 2014)

A comparison between parallelization approaches in molecular dynamics simulations on GPUs. - Lorenzo Rovigatti; Petr Sulc; István Z. Reguly; Flavio Romano (J. Comput. Chem., 2015)

TacoxDNA: A user-friendly web server for simulations of complex DNA structures, from single strands to origami. - Antonio Suma; Erik Poppleton; Michael Matthies; Petr Sulc; Flavio Romano; Ard A. Louis; Jonathan P. K. Doye; Cristian Micheletti; Lorenzo Rovigatti (J. Comput. Chem., 2019)

oxDNA: coarse-grained simulations of nucleic acids made simple. - Erik Poppleton; Michael Matthies; Debesh Mandal; Flavio Romano; Petr Sulc; Lorenzo Rovigatti (J. Open Source Softw., 2023)