Using a large-scale knowledge database on reactions and regulations to propose key upstream regulators of various sets of molecules participating in cell metabolism. - Pierre Blavy; Florence Gondret; Sandrine Lagarrigue; Jaap Van Milgen; Anne Siegel (BMC Syst. Biol., 2014)

PAX2GRAPHML: a python library for large-scale regulation network analysis using BioPAX. - François Moreews; Hugo Simon; Anne Siegel; Florence Gondret; Emmanuelle Becker (Bioinform., 2021)

Fixing molecular complexes in BioPAX standards to enrich interactions and detect redundancies using semantic web technologies. - Camille Juigné; Olivier Dameron; François Moreews; Florence Gondret; Emmanuelle Becker (Bioinform., 2023)