TPMS: a set of utilities for querying collections of gene trees. - Thomas Bigot; Vincent Daubin; Florent Lassalle; Guy Perrière (BMC Bioinform., 2013)

Inferring Horizontal Gene Transfer. - Matt Ravenhall; Nives Skunca; Florent Lassalle; Christophe Dessimoz (PLoS Comput. Biol., 2015)