Estimating Hidden Influences in Metabolic and Gene Regulatory Networks. - Florian Blöchl; Fabian J. Theis (ICA, 2009)

Spatial Analysis of Expression Patterns Predicts Genetic Interactions at the Mid-Hindbrain Boundary. - Dominik M. Wittmann; Florian Blöchl; Dietrich Trümbach; Wolfgang Wurst; Nilima Prakash; Fabian J. Theis (PLoS Comput. Biol., 2009)

Reconstruction of graphs based on random walks. - Dominik M. Wittmann; Daniel Schmidl; Florian Blöchl; Fabian J. Theis (Theor. Comput. Sci., 2009)

Uncovering the Structure of Heterogenous Biological Data: Fuzzy Graph Partitioning in the k-partite Setting. - Florian Blöchl; Mara L. Hartsperger; Volker Stümpflen; Fabian J. Theis (GCB, 2010)

Second-Order Source Separation Based on Prior Knowledge Realized in a Graph Model. - Florian Blöchl; Andreas Kowarsch; Fabian J. Theis (LVA/ICA, 2010)

Structuring heterogeneous biological information using fuzzy clustering of k-partite graphs. - Mara L. Hartsperger; Florian Blöchl; Volker Stümpflen; Fabian J. Theis (BMC Bioinform., 2010)

Knowledge-based matrix factorization temporally resolves the cellular responses to IL-6 stimulation. - Andreas Kowarsch; Florian Blöchl; Sebastian Bohl; Maria Saile; Norbert Gretz; Ursula Klingmüller; Fabian J. Theis (BMC Bioinform., 2010)

Integrating machine learning approaches into network science: exemplary applications and novel algorithms. - Florian Blöchl (2010)