A Computational Approach to Analyze the Mechanism of Action of the Kinase Inhibitor Bafetinib. - Thomas R. Burkard; Uwe Rix; Florian P. Breitwieser; Giulio Superti-Furga; Jacques Colinge (PLoS Comput. Biol., 2010)

Initial characterization of the human central proteome. - Thomas R. Burkard; Melanie Planyavsky; Ines Kaupe; Florian P. Breitwieser; Tilmann Bürckstümmer; Keiryn L. Bennett; Giulio Superti-Furga; Jacques Colinge (BMC Syst. Biol., 2011)

Bracken: estimating species abundance in metagenomics data. - Jennifer Lu; Florian P. Breitwieser; Peter Thielen; Steven L. Salzberg (PeerJ Comput. Sci., 2017)

A review of methods and databases for metagenomic classification and assembly. - Florian P. Breitwieser; Jennifer Lu; Steven L. Salzberg (Briefings Bioinform., 2019)

Pavian: interactive analysis of metagenomics data for microbiome studies and pathogen identification. - Florian P. Breitwieser; Steven L. Salzberg (Bioinform., 2020)

Fast and sensitive taxonomic assignment to metagenomic contigs. - Milot Mirdita; Martin Steinegger; Florian P. Breitwieser; Johannes Söding; Eli Levy Karin (Bioinform., 2021)

Exploring the functional composition of the human microbiome using a hand-curated microbial trait database. - J. L. Weissman; Sonia Dogra; Keyan Javadi; Samantha Bolten; Rachel Flint; Cyrus Davati; Jess Beattie; Keshav Dixit; Tejasvi Peesay; Shehar Awan; Peter Thielen; Florian P. Breitwieser; et al. (BMC Bioinform., 2021)