VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements. - Inimary T. Toby; Mikhail K. Levin; Edward Salinas; Scott Christley; Sanchita Bhattacharya; Felix Breden; Adam Buntzman; Brian Corrie; John M. Fonner; Namita T. Gupta; Uri Hershberg; Nishanth Marthandan; et al. (BMC Bioinform., 2016)

The Repertoire Dissimilarity Index as a method to compare lymphocyte receptor repertoires. - Christopher R. Bolen; Florian Rubelt; Jason A. Vander Heiden; Mark M. Davis (BMC Bioinform., 2017)

VDJPipe: a pipelined tool for pre-processing immune repertoire sequencing data. - Scott Christley; Mikhail K. Levin; Inimary T. Toby; John M. Fonner; Nancy Monson; William Rounds; Florian Rubelt; Walter Scarborough; Richard H. Scheuermann; Lindsay G. Cowell (BMC Bioinform., 2017)

Identifying specificity groups in the T cell receptor repertoire. - Jacob Glanville; Huang Huang; Allison Nau; Olivia Hatton; Lisa E. Wagar; Florian Rubelt; Xuhuai Ji; Arnold Han; Sheri M. Krams; Christina Pettus; Nikhil Haas; Cecilia S. Lindestam Arlehamn; et al. (Nat., 2017)