Local atlas selection and performance estimation in multi-atlas based segmentation. - Robin Langerak; Uulke A. van der Heide; Alexis N. T. J. Kotte; Floris F. Berendsen; Josien P. W. Pluim (ISBI, 2011)

Label fusion in multi-atlas based segmentation with user-defined local weights. - Robin Langerak; Uulke A. van der Heide; Alexis N. T. J. Kotte; Floris F. Berendsen; Josien P. W. Pluim (ISBI, 2011)

Segmentation of Cervical Images by Inter-subject Registration with a Statistical Organ Model. - Floris F. Berendsen; Uulke A. van der Heide; Thomas R. Langerak; Alexis N. T. J. Kotte; Josien P. W. Pluim (Abdominal Imaging, 2011)

Evaluating and improving label fusion in atlas-based segmentation using the surface distance. - Thomas R. Langerak; Uulke A. van der Heide; Alexis N. T. J. Kotte; Floris F. Berendsen; Josien P. W. Pluim (Image Processing, 2011)

Particle Smoothing for Solving Ambiguity Problems in One-shot Structured Light Systems. - Ferdinand van der Heijden; Floris F. Berendsen; Luuk J. Spreeuwers; E. Schippers (VISAPP, 2011)

Simultaneous pairwise registration for image mosaicing of TEE data. - Harriët Wilhelmina Mulder; Marijn van Stralen; Claire Ren; Floris F. Berendsen; Johan G. Bosch; Josien P. W. Pluim (ISBI, 2013)

Free-Form Registration Involving Disappearing Structures: Application to Brachytherapy MRI. - Floris F. Berendsen; Alexis N. T. J. Kotte; Astrid A. C. de Leeuw; Max A. Viergever; Josien P. W. Pluim (Abdominal Imaging, 2013)

Expert-driven label fusion in multi-atlas-based segmentation of the prostate using weighted atlases. - Thomas R. Langerak; Uulke A. van der Heide; Alexis N. T. J. Kotte; Floris F. Berendsen; Marco van Vulpen; Josien P. W. Pluim (Int. J. Comput. Assist. Radiol. Surg., 2013)

Free-form image registration regularized by a statistical shape model: application to organ segmentation in cervical MR. - Floris F. Berendsen; Uulke A. van der Heide; Thomas R. Langerak; Alexis N. T. J. Kotte; Josien P. W. Pluim (Comput. Vis. Image Underst., 2013)

Registration of organs with sliding interfaces and changing topologies. - Floris F. Berendsen; Alexis N. T. J. Kotte; Max A. Viergever; Josien P. W. Pluim (Image Processing, 2014)

Improving label fusion in multi-atlas based segmentation by locally combining atlas selection and performance estimation. - Thomas R. Langerak; Uulke A. van der Heide; Alexis N. T. J. Kotte; Floris F. Berendsen; Josien P. W. Pluim (Comput. Vis. Image Underst., 2015)

Medical Image Registration Guided by Application-Specific Geometry. - Floris F. Berendsen (2015)

The Design of SuperElastix - A Unifying Framework for a Wide Range of Image Registration Methodologies. - Floris F. Berendsen; Kasper Marstal; Stefan Klein 001; Marius Staring (CVPR Workshops, 2016)

SimpleElastix: A User-Friendly, Multi-lingual Library for Medical Image Registration. - Kasper Marstal; Floris F. Berendsen; Marius Staring; Stefan Klein 001 (CVPR Workshops, 2016)

Automatic Left Atrial Wall Segmentation from Contrast-Enhanced CT Angiography Images. - Qian Tao; Rahil Shahzad; Floris F. Berendsen; Rob J. van der Geest (STACOM@MICCAI, 2016)

Nonrigid Image Registration Using Multi-scale 3D Convolutional Neural Networks. - Hessam Sokooti; Bob D. de Vos; Floris F. Berendsen; Boudewijn P. F. Lelieveldt; Ivana Isgum; Marius Staring (MICCAI (1), 2017)

End-to-End Unsupervised Deformable Image Registration with a Convolutional Neural Network. - Bob D. de Vos; Floris F. Berendsen; Max A. Viergever; Marius Staring; Ivana Isgum (DLMIA/ML-CDS@MICCAI, 2017)

GPU-based stochastic-gradient optimization for non-rigid medical image registration in time-critical applications. - Parag Bhosale; Marius Staring; Zaid Al-Ars; Floris F. Berendsen (Image Processing, 2018)

The Continuous Registration Challenge: Evaluation-as-a-Service for Medical Image Registration Algorithms. - Kasper Marstal; Floris F. Berendsen; Niels Dekker; Marius Staring; Stefan Klein 001 (ISBI, 2019)

3D Convolutional Neural Networks Image Registration Based on Efficient Supervised Learning from Artificial Deformations. - Hessam Sokooti; Bob D. de Vos; Floris F. Berendsen; Mohsen Ghafoorian; Sahar Yousefi; Boudewijn P. F. Lelieveldt; Ivana Isgum; Marius Staring (CoRR, 2019)

A deep learning framework for unsupervised affine and deformable image registration. - Bob D. de Vos; Floris F. Berendsen; Max A. Viergever; Hessam Sokooti; Marius Staring; Ivana Isgum (Medical Image Anal., 2019)