Building in-silico pathway SBML models from heterogeneous sources. - Yiannis Kanaris; Konstantinos Moutselos; Aristotelis Chatziioannou; Ilias Maglogiannis; Fragiskos N. Kolisis (BIBE, 2008)

Gene ARMADA: an integrated multi-analysis platform for microarray data implemented in MATLAB. - Aristotelis Chatziioannou; Panagiotis Moulos; Fragiskos N. Kolisis (BMC Bioinform., 2009)

KEGGconverter: a tool for the in-silico modelling of metabolic networks of the KEGG Pathways database. - Konstantinos Moutselos; Ioannis Kanaris; Aristotelis Chatziioannou; Ilias Maglogiannis; Fragiskos N. Kolisis (BMC Bioinform., 2009)

An in-silico model of the biosynthesis of neurotransmitter glutamate, elucidates the complex regulatory role of glucocorticoids in neurotransmitter glutamate release. - Aristotelis Chatziioannou; Georgios Palaiologos; Fragiskos N. Kolisis (Comput. Biol. Medicine, 2009)

GRISSOM Platform: Enabling Distributed Processing and Management of Biological Data Through Fusion of Grid and Web Technologies. - Aristotelis A. Chatziioannou; Ioannis Kanaris; Charalampos Doukas; Panagiotis Moulos; Fragiskos N. Kolisis; Ilias Maglogiannis (IEEE Trans. Inf. Technol. Biomed., 2011)

A Galaxy Workflow for the Functional Annotation of Metagenomic Samples. - Eleftherios Pilalis; Eythymios Ladoukakis; Fragiskos N. Kolisis; Aristotelis Chatziioannou (SETN, 2012)

Application of an Integrative Computational Framework in Trancriptomic Data of Atherosclerotic Mice Suggests Numerous Molecular Players. - Olga Papadodima; Allan Sirsjö; Fragiskos N. Kolisis; Aristotelis Chatziioannou (Adv. Bioinformatics, 2012)