Network-based enrichment analysis of gene expression through protein-protein interaction data. - Raimon Massanet Vila; Francesc Fernández-Albert; Pere Caminal; Alexandre Perera (EMBC, 2012)

An R package to analyse LC/MS metabolomic data: MAIT (Metabolite Automatic Identification Toolkit). - Francesc Fernández-Albert; Rafael Llorach; Cristina Andres-Lacueva; Alexandre Perera (Bioinform., 2014)

Intensity drift removal in LC/MS metabolomics by common variance compensation. - Francesc Fernández-Albert; Rafael Llorach; Mar Garcia-Aloy; Andrey Ziyatdinov; Cristina Andres-Lacueva; Alexandre Perera-Lluna (Bioinform., 2014)

Machine learning methods for the analysis of liquid chromatography-mass spectrometry datasets in metabolomics. - Francesc Fernández-Albert (2014)

FELLA: an R package to enrich metabolomics data. - Sergio Picart-Armada; Francesc Fernández-Albert; Maria Vinaixa; Oscar Yanes; Alexandre Perera-Lluna (BMC Bioinform., 2018)

HieRFIT: a hierarchical cell type classification tool for projections from complex single-cell atlas datasets. - Yasin Kaymaz; Florian Ganglberger; Ming Tang; Christian Haslinger; Francesc Fernández-Albert; Nathan Lawless; Timothy B. Sackton (Bioinform., 2021)