'TransMem': a neural network implemented in Excel spreadsheets for predicting transmembrane domains of proteins. - Patrick Aloy; Juan Cedano; Baldomero Oliva; Francesc X. Avilés; Enrique Querol (Comput. Appl. Biosci., 1997)

A Computational System for Modeling Flexible Protein-Protein and protein-DNA Docking. - Michael J. E. Sternberg; Patrick Aloy; Henry A. Gabb; Richard M. Jackson; Gidon Moont; Enrique Querol; Francesc X. Avilés (ISMB, 1998)

Refinement of modelled structures by knowledge-based energy profiles and secondary structure prediction: Application to the human procarboxypeptidase A2. - Patrick Aloy; José M. Mas; Marc A. Martí-Renom; Enrique Querol; Francesc X. Avilés; Baldomero Oliva (J. Comput. Aided Mol. Des., 2000)

Classification of protein disulphide-bridge topologies. - José M. Mas; Patrick Aloy; Marc A. Martí-Renom; Baldomero Oliva; R. de Llorens; Francesc X. Avilés; Enrique Querol (J. Comput. Aided Mol. Des., 2001)

TranScout: prediction of gene expression regulatory proteins from their sequences. - Daniel Aguilar; Baldomero Oliva; Francesc X. Avilés; Enrique Querol (Bioinform., 2002)

SNOW: Standard NOmenclature Wizard to help searching for (bio) chemical standardized names. - Daniel Aguilar; Baldomero Oliva; Francesc X. Avilés; Enrique Querol (Bioinform., 2003)

ArchDB: automated protein loop classification as a tool for structural genomics. - Jordi Espadaler; Narcis Fernandez-Fuentes; Antonio Hermoso; Enrique Querol; Francesc X. Avilés; Michael J. E. Sternberg; Baldomero Oliva (Nucleic Acids Res., 2004)

TrSDB: a proteome database of transcription factors. - Antonio Hermoso; Daniel Aguilar; Francesc X. Avilés; Enrique Querol (Nucleic Acids Res., 2004)

Identification of function-associated loop motifs and application to protein function prediction. - Jordi Espadaler; Enrique Querol; Francesc X. Avilés; Baldo Oliva (Bioinform., 2006)

AGGRESCAN: a server for the prediction and evaluation of "hot spots" of aggregation in polypeptides. - Oscar Conchillo-Solé; Natalia Sanchez de Groot; Francesc X. Avilés; Josep Vendrell; Xavier Daura; Salvador Ventura (BMC Bioinform., 2007)

Prediction of enzyme function by combining sequence similarity and protein interactions. - Jordi Espadaler; Narayanan Eswar; Enrique Querol; Francesc X. Avilés; Andrej Sali; Marc A. Martí-Renom; Baldomero Oliva (BMC Bioinform., 2008)