Recent improvements to the SMART domain-based sequence annotation resource. - Ivica Letunic; Leo Goodstadt; Nicholas J. Dickens; Tobias Doerks; Jörg Schultz; Richard Mott; Francesca D. Ciccarelli; Richard R. Copley; Chris P. Ponting; Peer Bork (Nucleic Acids Res., 2002)

The PAM domain, a multi-protein complex-associated module with an all-alpha-helix fold. - Francesca D. Ciccarelli; Elisa Izaurralde; Peer Bork (BMC Bioinform., 2003)

SMART 4.0: towards genomic data integration. - Ivica Letunic; Richard R. Copley; Steffen Schmidt; Francesca D. Ciccarelli; Tobias Doerks; Jörg Schultz; Chris P. Ponting; Peer Bork (Nucleic Acids Res., 2004)

The WHy domain mediates the response to desiccation in plants and bacteria. - Francesca D. Ciccarelli; Peer Bork (Bioinform., 2005)

FancyGene: dynamic visualization of gene structures and protein domain architectures on genomic loci. - Davide Rambaldi; Francesca D. Ciccarelli (Bioinform., 2009)

Network of Cancer Genes: a web resource to analyze duplicability, orthology and network properties of cancer genes. - Adnan S. Syed; Matteo D'Antonio; Francesca D. Ciccarelli (Nucleic Acids Res., 2010)

Modification of Gene Duplicability during the Evolution of Protein Interaction Network. - Matteo D'Antonio; Francesca D. Ciccarelli (PLoS Comput. Biol., 2011)

Network of Cancer Genes (NCG 3.0): integration and analysis of genetic and network properties of cancer genes. - Matteo D'Antonio; Vera Pendino; Shruti Sinha; Francesca D. Ciccarelli (Nucleic Acids Res., 2012)

NCG 4.0: the network of cancer genes in the era of massive mutational screenings of cancer genomes. - Omer An; Vera Pendino; Matteo D'Antonio; Emanuele Ratti; Marco Gentilini; Francesca D. Ciccarelli (Database J. Biol. Databases Curation, 2014)

NCG 5.0: updates of a manually curated repository of cancer genes and associated properties from cancer mutational screenings. - Omer An; Giovanni Marco Dall'Olio; Thanos P. Mourikis; Francesca D. Ciccarelli (Nucleic Acids Res., 2016)

Computational approaches in cancer genomics. - Francesca D. Ciccarelli (GECCO, 2017)

MEGA-V: detection of variant gene sets in patient cohorts. - Gennaro Gambardella; Matteo Cereda; Lorena Benedetti; Francesca D. Ciccarelli (Bioinform., 2017)

Rarity: discovering rare cell populations from single-cell imaging data. - Kaspar Märtens; Michele Bortolomeazzi; Lucia Montorsi; Jo Spencer; Francesca D. Ciccarelli; Christopher Yau (Bioinform., 2023)