Theoretical investigation of substrate specificity for cytochromes P450 IA2, P450 IID6 and P450 IIIA4. - Francesca De Rienzo; Francesca Fanelli; Maria Cristina Menziani; Pier Giuseppe De Benedetti (J. Comput. Aided Mol. Des., 2000)

Molecular Dynamics Simulations of the Ligand-Induced Chemical Information Transfer in the 5-HT1A Receptor. - Michele Seeber; Pier Giuseppe De Benedetti; Francesca Fanelli (J. Chem. Inf. Comput. Sci., 2003)

Probing Fragment Complementation by Rigid-Body Docking: in Silico Reconstitution of Calbindin D9k. - Daniele Dell'Orco; Michele Seeber; Pier Giuseppe De Benedetti; Francesca Fanelli (J. Chem. Inf. Model., 2005)

Quaternary structure predictions of transmembrane proteins starting from the monomer: a docking-based approach. - Daniele Casciari; Michele Seeber; Francesca Fanelli (BMC Bioinform., 2006)

Inactive and active states and supramolecular organization of GPCRs: insights from computational modeling. - Francesca Fanelli; Pier Giuseppe De Benedetti (J. Comput. Aided Mol. Des., 2006)

Homodimerization of Neurotensin 1 Receptor Involves Helices 1, 2, and 4: Insights from Quaternary Structure Predictions and Dimerization Free Energy Estimations. - Daniele Casciari; Daniele Dell'Orco; Francesca Fanelli (J. Chem. Inf. Model., 2008)

Wordom: A user-friendly program for the analysis of molecular structures, trajectories, and free energy surfaces. - Michele Seeber; Angelo Felline; Francesco Raimondi 001; Stefanie Muff; Ran Friedman; Francesco Rao; Amedeo Caflisch; Francesca Fanelli (J. Comput. Chem., 2011)

Nucleotide Binding Switches the Information Flow in Ras GTPases. - Francesco Raimondi 001; Guillem Portella; Modesto Orozco; Francesca Fanelli (PLoS Comput. Biol., 2011)

Network and Atomistic Simulations Unveil the Structural Determinants of Mutations Linked to Retinal Diseases. - Simona Mariani; Daniele Dell'Orco; Angelo Felline; Francesco Raimondi 001; Francesca Fanelli (PLoS Comput. Biol., 2013)

WebPSN: a web server for high-throughput investigation of structural communication in biomacromolecules. - Michele Seeber; Angelo Felline; Francesco Raimondi 001; Simona Mariani; Francesca Fanelli (Bioinform., 2015)

Catching Functional Modes and Structural Communication in Dbl Family Rho Guanine Nucleotide Exchange Factors. - Francesco Raimondi 001; Angelo Felline; Francesca Fanelli (J. Chem. Inf. Model., 2015)

Interconnecting Flexibility, Structural Communication, and Function in RhoGEF Oncoproteins. - Angelo Felline; Luca Belmonte; Francesco Raimondi 001; Luca Bellucci; Francesca Fanelli (J. Chem. Inf. Model., 2019)

webPSN v2.0: a webserver to infer fingerprints of structural communication in biomacromolecules. - Angelo Felline; Michele Seeber; Francesca Fanelli (Nucleic Acids Res., 2020)