Selecting anti-HIV therapies based on a variety of genomic and clinical factors. - Michal Rosen-Zvi; André Altmann; Mattia Prosperi; Ehud Aharoni; Hani Neuvirth; Anders Sönnerborg; Eugen Schülter; Daniel Struck; Yardena Peres; Francesca Incardona; Rolf Kaiser; Maurizio Zazzi; et al. (ISMB, 2008)

Stochastic modelling of genotypic drug-resistance for human immunodeficiency virus towards long-term combination therapy optimization. - Mattia C. F. Prosperi; Roberto D'Autilia; Francesca Incardona; Andrea De Luca; Maurizio Zazzi; Giovanni Ulivi (Bioinform., 2009)

History-alignment models for bias-aware prediction of virological response to HIV combination therapy. - Jasmina Bogojeska; Daniel Stöckel; Maurizio Zazzi; Rolf Kaiser; Francesca Incardona; Michal Rosen-Zvi; Thomas Lengauer (AISTATS, 2012)

Structured Proportional Jump Processes. - Tal El-Hay; Omer Weissbrod; Elad Eban; Maurizio Zazzi; Francesca Incardona (UAI, 2014)

Predicting human-immunodeficiency virus rebound after therapy initiation/switch using genetic, laboratory, and clinical data. - Mattia Prosperi; Alejandro Pironti; Francesca Incardona; Giuseppe Tradigo; Maurizio Zazzi (BCB, 2016)

PhyloGeoTool: interactively exploring large phylogenies in an epidemiological context. - Pieter Libin; Ewout Vanden Eynden; Francesca Incardona; Ann Nowé; Antonia Bezenchek; EucoHIV Study Group; Anders Sönnerborg; Anne-Mieke Vandamme; Kristof Theys; Guy Baele (Bioinform., 2017)

Factorial HMMs with Collapsed Gibbs Sampling for Optimizing Long-term HIV Therapy. - Amit Gruber; Chen Yanover; Tal El-Hay; Anders Sönnerborg; Vanni Borghi; Francesca Incardona; Yaara Goldschmidt (AISTATS, 2018)

Incorporating temporal dynamics of mutations to enhance the prediction capability of antiretroviral therapy's outcome for HIV-1. - Giulia Di Teodoro; Martin Pirkl; Francesca Incardona; Ilaria Vicenti; Anders Sönnerborg; Rolf Kaiser; Laura Palagi; Maurizio Zazzi; Thomas Lengauer (CoRR, 2023)