A Multi-objective Optimisation Approach to the Design of Experiment in De Novo Assembly Projects. - Francesca Nadalin; Francesco Vezzi; Alberto Policriti (DEXA Workshops, 2012)

GapFiller: a de novo assembly approach to fill the gap within paired reads. - Francesca Nadalin; Francesco Vezzi; Alberto Policriti (BMC Bioinform., 2012)

Chimera: a Bioconductor package for secondary analysis of fusion products. - Marco Beccuti; Matteo Carrara; Francesca Cordero; Fulvio Lazzarato; Susanna Donatelli; Francesca Nadalin; Alberto Policriti; Raffaele A. Calogero (Bioinform., 2014)

Paired is better: local assembly algorithms for NGS paired reads and applications to RNA-Seq. - Francesca Nadalin (2014)

BIS2Analyzer: a server for co-evolution analysis of conserved protein families. - Francesco Oteri; Francesca Nadalin; Raphaël Champeimont; Alessandra Carbone (Nucleic Acids Res., 2017)

Protein-protein interaction specificity is captured by contact preferences and interface composition. - Francesca Nadalin; Alessandra Carbone (Bioinform., 2018)

iBIS2Analyzer: a web server for a phylogeny-driven coevolution analysis of protein families. - Francesco Oteri; Edoardo Sarti; Francesca Nadalin; Alessandra Carbone (Nucleic Acids Res., 2022)