Non-Markovian effects on protein sequence evolution due to site dependent substitution rates. - Francesca Rizzato; Alex Rodriguez; Alessandro Laio (BMC Bioinform., 2016)

Optimal regularizations for data generation with probabilistic graphical models. - Arnaud Fanthomme; Francesca Rizzato; Simona Cocco; Rémi Monasson (CoRR, 2021)

Infer global, predict local: Quantity-relevance trade-off in protein fitness predictions from sequence data. - Lorenzo Posani; Francesca Rizzato; Rémi Monasson; Simona Cocco (PLoS Comput. Biol., 2023)