Bayesian Joint Estimation of CN and LOH Aberrations. - Paola M. V. Rancoita; Marcus Hutter; Francesco Bertoni; Ivo Kwee (IWANN (2), 2009)

Bayesian DNA copy number analysis. - Paola M. V. Rancoita; Marcus Hutter; Francesco Bertoni; Ivo Kwee (BMC Bioinform., 2009)

An integrated Bayesian analysis of LOH and copy number data. - Paola M. V. Rancoita; Marcus Hutter; Francesco Bertoni; Ivo Kwee (BMC Bioinform., 2010)

Bayesian network data imputation with application to survival tree analysis. - Paola M. V. Rancoita; Marco Zaffalon; Emanuele Zucca; Francesco Bertoni; Cassio P. de Campos (Comput. Stat. Data Anal., 2016)

A Fast Prize-Collecting Steiner Forest Algorithm for Functional Analyses in Biological Networks. - Murodzhon Akhmedov; Alexander LeNail; Francesco Bertoni; Ivo Kwee; Ernest Fraenkel; Roberto Montemanni (CPAIOR, 2017)

PCSF: An R-package for network-based interpretation of high-throughput data. - Murodzhon Akhmedov; Amanda J. Kedaigle; Renan Escalante Chong; Roberto Montemanni; Francesco Bertoni; Ernest Fraenkel; Ivo Kwee (PLoS Comput. Biol., 2017)

cuRnet: an R package for graph traversing on GPU. - Vincenzo Bonnici; Federico Busato; Stefano Aldegheri; Murodzhon Akhmedov; Luciano Cascione; Alberto Arribas Carmena; Francesco Bertoni; Nicola Bombieri; Ivo Kwee; Rosalba Giugno (BMC Bioinform., 2018)

Correction to: cuRnet: an R package for graph traversing on GPU. - Vincenzo Bonnici; Federico Busato; Stefano Aldegheri; Murodzhon Akhmedov; Luciano Cascione; Alberto Arribas Carmena; Francesco Bertoni; Nicola Bombieri; Ivo Kwee; Rosalba Giugno (BMC Bioinform., 2018)

A Reliable Method to Remove Batch Effects Maintaining Group Differences in Lymphoma Methylation Case Study. - Giulia Pontali; Luciano Cascione; Alberto J. Arribas; Andrea Rinaldi; Francesco Bertoni; Rosalba Giugno (IWBBIO (2), 2019)

RNAdetector: a free user-friendly stand-alone and cloud-based system for RNA-Seq data analysis. - Alessandro La Ferlita; Salvatore Alaimo; Sebastiano Di Bella; Emanuele Martorana; Georgios I. Laliotis; Francesco Bertoni; Luciano Cascione; Philip N. Tsichlis; Alfredo Ferro; Roberta Bosotti; Alfredo Pulvirenti (BMC Bioinform., 2021)

EasyCircR: Detection and reconstruction of circular RNAs post-transcriptional regulatory interaction networks. - Antonino Aparo; Simone Avesani; Luca Parmigiani; Sara Napoli; Francesco Bertoni; Vincenzo Bonnici; Luciano Cascione; Rosalba Giugno (Comput. Biol. Medicine, 2025)