PROTEUS: a suite of programs for prediction of structural features of proteins using an Apple IIe. - Stefano Pascarella; Francesco Bossa (Comput. Appl. Biosci., 1987)

CLEAVAGE: a microcomputer program for predicting signal sequence cleavage sites. - Stefano Pascarella; Francesco Bossa (Comput. Appl. Biosci., 1989)

PRONET: a microcomputer program for predicting the secondary structure of proteins with a neural network. - Stefano Pascarella; Francesco Bossa (Comput. Appl. Biosci., 1989)

CAMPO, SCR_FIND and CHC_FIND: a suite of web tools for computational structural biology. - Alessandro Paiardini; Francesco Bossa; Stefano Pascarella (Nucleic Acids Res., 2005)

Structural adaptation of the subunit interface of oligomeric thermophilic and hyperthermophilic enzymes. - Elisa Maugini; Daniele Tronelli; Francesco Bossa; Stefano Pascarella (Comput. Biol. Chem., 2009)

PyMod: sequence similarity searches, multiple sequence-structure alignments, and homology modeling within PyMOL. - Emanuele Bramucci; Alessandro Paiardini; Francesco Bossa; Stefano Pascarella (BMC Bioinform., 2012)