Modeling T-cell activation using gene expression profiling and state-space models. - Claudia Rangel; John Angus; Zoubin Ghahramani; Maria Lioumi; Elizabeth Sotheran; Alessia Gaiba; David L. Wild; Francesco Falciani (Bioinform., 2004)

A Bayesian approach to reconstructing genetic regulatory networks with hidden factors. - Matthew J. Beal; Francesco Falciani; Zoubin Ghahramani; Claudia Rangel; David L. Wild (Bioinform., 2005)

Biomarker discovery in microarray gene expression data with Gaussian processes. - Wei Chu; Zoubin Ghahramani; Francesco Falciani; David L. Wild (Bioinform., 2005)

GALGO: an R package for multivariate variable selection using genetic algorithms. - Victor Trevino; Francesco Falciani (Bioinform., 2006)

Functional modules integrating essential cellular functions are predictive of the response of leukaemia cells to DNA damage. - Katrin Sameith; Philipp Antczak; Elliot Marston; Nil Turan; Dieter Maier; Tanja Stankovic; Francesco Falciani (Bioinform., 2008)

A computational framework for gene regulatory network inference that combines multiple methods and datasets. - Rita Gupta; Anna Stincone; Philipp Antczak; Sarah Durant; Roy Bicknell; Andreas Bikfalvi; Francesco Falciani (BMC Syst. Biol., 2011)

Knowledge management for systems biology a general and visually driven framework applied to translational medicine. - Dieter Maier; Wenzel Kalus; Martin Wolff; Susana G. Kalko; Josep Roca; Igor Marín de Mas; Nil Turan; Marta Cascante; Francesco Falciani; Miguel Hernandez; Jordi Villà-Freixa; Sascha Losko (BMC Syst. Biol., 2011)

A Systems Biology Approach Identifies Molecular Networks Defining Skeletal Muscle Abnormalities in Chronic Obstructive Pulmonary Disease. - Nil Turan; Susana G. Kalko; Anna Stincone; Kim Clarke; Ayesha Sabah; Katherine Howlett; S. John Curnow; Diego A. Rodriguez; Marta Cascante; Laura O'Neill; Stuart Egginton; Josep Roca; et al. (PLoS Comput. Biol., 2011)

Towards a System Level Understanding of Non-Model Organisms Sampled from the Environment: A Network Biology Approach. - Tim D. Williams; Nil Turan; Amer M. Diab; Huifeng Wu; Carolynn Mackenzie; Katie L. Bartie; Olga Hrydziuszko; Brett P. Lyons; Grant D. Stentiford; John M. Herbert; Joseph K. Abraham; Ioanna Katsiadaki; et al. (PLoS Comput. Biol., 2011)

COMPADRE: an R and web resource for pathway activity analysis by component decompositions. - Roberto-Rafael Ramos-Rodriguez; Raquel Cuevas-Diaz-Duran; Francesco Falciani; José Gerardo Tamez-Peña; Victor Trevino (Bioinform., 2012)

ChainRank, a chain prioritisation method for contextualisation of biological networks. - Ákos Tényi; Pedro de Atauri; David Gomez-Cabrero; Isaac Cano; Kim Clarke; Francesco Falciani; Marta Cascante; Josep Roca; Dieter Maier (BMC Bioinform., 2016)

A Network Biology Approach Identifies Molecular Cross-Talk between Normal Prostate Epithelial and Prostate Carcinoma Cells. - Victor Trevino; Alberto Cassese; Zsuzsanna Nagy; Xiaodong Zhuang; John M. Herbert; Philipp Antzack; Kim Clarke; Nicholas Davies; Ayesha Rahman; Moray J. Campbell; Michele Guindani; Roy Bicknell; et al. (PLoS Comput. Biol., 2016)

Structure-Based Networks for Drug Validation. - Catalina Cangea; Arturas Grauslys; Pietro Liò; Francesco Falciani (CoRR, 2018)

Systems biology reveals how altered TGFβ signalling with age reduces protection against pro-inflammatory stimuli. - David Hodgson; Andrew D. Rowan; Francesco Falciani; Carole J. Proctor (PLoS Comput. Biol., 2019)

SAERMA: Stacked Autoencoder Rule Mining Algorithm for the Interpretation of Epistatic Interactions in GWAS for Extreme Obesity. - Casimiro Aday Curbelo Montañez; Paul Fergus; Carl Chalmers; Nurul Hashimah Ahamed Hassain Malim; Basma Abdulaimma; Denis Reilly 001; Francesco Falciani (IEEE Access, 2020)

Computationally predicted gene regulatory networks in molluscan biomineralization identify extracellular matrix production and ion transportation pathways. - Victoria A. Sleight; Philipp Antczak; Francesco Falciani; Melody S. Clark (Bioinform., 2020)