Prediction of hydration free energies for the SAMPL4 data set with the AMOEBA polarizable force field. - Francesco Manzoni; Pär Söderhjelm (J. Comput. Aided Mol. Des., 2014)

Can System Truncation Speed up Ligand-Binding Calculations with Periodic Free-Energy Simulations? - Francesco Manzoni; Jon Uranga; Samuel Genheden; Ulf Ryde (J. Chem. Inf. Model., 2017)

Assessing the stability of free-energy perturbation calculations by performing variations in the method. - Francesco Manzoni; Ulf Ryde (J. Comput. Aided Mol. Des., 2018)