Ligand-, structure- and pharmacophore-based molecular fingerprints: a case study on adenosine A1, A2A, A2B, and A3 receptor antagonists. - Francesco Sirci; Laura Goracci; David Rodríguez 003; Jacqueline van Muijlwijk-Koezen; Hugo Gutiérrez-de-Terán; Raimund Mannhold (J. Comput. Aided Mol. Des., 2012)

Virtual Fragment Screening: Discovery of Histamine H3 Receptor Ligands Using Ligand-Based and Protein-Based Molecular Fingerprints. - Francesco Sirci; Enade P. Istyastono; Henry F. Vischer; Albert J. Kooistra; Saskia Nijmeijer; Martien Kuijer; Maikel Wijtmans; Raimund Mannhold; Rob Leurs; Iwan J. P. de Esch; Chris de Graaf (J. Chem. Inf. Model., 2012)

Mantra 2.0: an online collaborative resource for drug mode of action and repurposing by network analysis. - Diego Carrella; Francesco Napolitano; Rossella Rispoli; Mario Miglietta; Annamaria Carissimo; Luisa Cutillo; Francesco Sirci; Francesco Gregoretti; Diego di Bernardo (Bioinform., 2014)

Drug-set enrichment analysis: a novel tool to investigate drug mode of action. - Francesco Napolitano; Francesco Sirci; Diego Carrella; Diego di Bernardo (Bioinform., 2016)

gene2drug: a computational tool for pathway-based rational drug repositioning. - Francesco Napolitano; Diego Carrella; Barbara Mandriani; Sandra Pisonero-Vaquero; Francesco Sirci; Diego L. Medina; Nicola Brunetti-Pierri; Diego di Bernardo (Bioinform., 2018)