On local and global feature weight discovery for case-based reasoning. - Werner Dubitzky; Francisco Azuaje; Philippe Lopes; Paul J. McCullagh; Y. Song (CATA, 1999)

Predicting coronary disease risk based on short-term RR interval measurements: a neural network approach. - Francisco Azuaje; Werner Dubitzky; Philippe Lopes; Norman D. Black; Kenneth Adamson; X. Wu; John A. White (Artif. Intell. Medicine, 1999)

Improving clinical decision support through case-based data fusion. - Francisco Azuaje; Werner Dubitzky; Norman D. Black; Kenny Adamson (IEEE Trans. Biomed. Eng., 1999)

Making genome expression data meaningful: Prediction and discovery of classes of cancer through a connectionist learning approach. - Francisco Azuaje (BIBE, 2000)

Retrieval strategies for case-based reasoning: a categorised bibliography. - Francisco Azuaje; Werner Dubitzky; Norman D. Black; Kenny Adamson (Knowl. Eng. Rev., 2000)

Discovering relevance knowledge in data: a growing cell structures approach. - Francisco Azuaje; Werner Dubitzky; Norman D. Black; Kenneth Adamson (IEEE Trans. Syst. Man Cybern. Part B, 2000)

An unsupervised neural learning approach to retrieval strategies for case-based reasoning and decision support. - Francisco Javier Azuaje (2000)

A Genetic Algorithm and Growing Cell Structure Approach to Learning Case Retrieval Structures. - Werner Dubitzky; Francisco Azuaje (Soft Computing in Case Based Reasoning, 2001)

Adaptation and reverse evolution in a digital ecosystem. - Francisco Azuaje (SMC, 2001)

A computational neural approach to support the discovery of gene function and classes of cancer. - Francisco Azuaje (IEEE Trans. Biomed. Eng., 2001)

A cluster validity framework for genome expression data. - Francisco Azuaje (Bioinform., 2002)

An Immune-inspired Approach to Learning and Classification. - Francisco Azuaje (Applied Informatics, 2003)

Editorial - AI in the Life Sciences. - Werner Dubitzky; Francisco Azuaje (Artif. Intell. Rev., 2003)

Clustering-based Approaches to Discovering and Visualising Microarray Data Patterns. - Francisco Azuaje (Briefings Bioinform., 2003)

Machaon CVE: cluster validation for gene expression data. - Nadia Bolshakova; Francisco Azuaje (Bioinform., 2003)

Genomic data sampling and its effect on classification performance assessment. - Francisco Azuaje (BMC Bioinform., 2003)

A markup language for electrocardiogram data acquisition and analysis (ecgML). - Haiying Wang 001; Francisco Azuaje; Benjamin Jung; Norman D. Black (BMC Medical Informatics Decis. Mak., 2003)

Cluster validation techniques for genome expression data. - Nadia Bolshakova; Francisco Azuaje (Signal Process., 2003)

A computational evolutionary approach to evolving game strategy and cooperation. - Francisco Azuaje (IEEE Trans. Syst. Man Cybern. Part B, 2003)

Incorporating Ontology-Driven Similarity Knowledge into Functional Genomics: An Exploratory Study. - Francisco Azuaje; Olivier Bodenreider (BIBE, 2004)

Gene expression correlation and gene ontology-based similarity: an assessment of quantitative relationships. - Haiying Wang 001; Francisco Azuaje; Olivier Bodenreider; Joaquín Dopazo (CIBCB, 2004)

Interactive GSOM-Based Approaches for Improving Biomedical Pattern Discovery and Visualization. - Haiying Wang 001; Francisco Azuaje; Norman D. Black (CIS, 2004)

Data Mining Approaches to Diffuse Large B-Cell Lymphoma Gene Expression Data Interpretation. - Jesús S. Aguilar-Ruiz; Francisco Azuaje; José Cristóbal Riquelme Santos (DaWaK, 2004)

A Non-Random Data Sampling Method for Classification Model Assessment. - Dan Sprevak; Francisco Azuaje; Haiying Wang 001 (ICPR (3), 2004)

Knowledge Discovery in Lymphoma Cancer from Gene-Expression. - Jesús S. Aguilar-Ruiz; Francisco Azuaje (IDEAL, 2004)

An integrative and interactive framework for improving biomedical pattern discovery and visualization. - Haiying Wang 001; Francisco Azuaje; Norman D. Black (IEEE Trans. Inf. Technol. Biomed., 2004)

Reply to comments on 'A computational evolutionary approach to evolving game strategy and Cooperation'. - Francisco Azuaje (IEEE Trans. Syst. Man Cybern. Part B, 2004)

Integrative Data Analysis and Visualization: Introduction to Critical Problems, Goals and Challenges. - Francisco Azuaje; Joaquín Dopazo (Data Analysis and Visualization in Genomics and Proteomics, 2005)

Data and Predictive Model Integration: An Overview of Key Concepts, Problems and Solutions. - Francisco Azuaje; Joaquín Dopazo; Haiying Wang 001 (Data Analysis and Visualization in Genomics and Proteomics, 2005)

A Missing Data Estimation Analysis in Type II Diabetes Databases. - Marisol Giardina; Yongyang Huo; Francisco Azuaje; Paul J. McCullagh; Roy Harper (CBMS, 2005)

An Ontology-Driven Clustering Method for Supporting Gene Expression Analysis. - Haiying Wang 001; Francisco Azuaje; Olivier Bodenreider (CBMS, 2005)

Integrative data analysis for functional prediction: a multi-objective optimization approach. - Francisco Azuaje (Bioinform., 2005)

An integrated tool for microarray data clustering and cluster validity assessment . - Nadia Bolshakova; Francisco Azuaje; Padraig Cunningham (Bioinform., 2005)

A knowledge-driven approach to cluster validity assessment. - Nadia Bolshakova; Francisco Azuaje; Padraig Cunningham (Bioinform., 2005)

Non-linear mapping for exploratory data analysis in functional genomics. - Francisco Azuaje; Haiying Wang 001; Alban Chesneau (BMC Bioinform., 2005)

A Supervised Learning Approach to Predicting Coronary Heart Disease Complications in Type 2 Diabetes Mellitus Patients. - Marisol Giardina; Francisco Azuaje; Paul J. McCullagh; Roy Harper (BIBE, 2006)

Semi-Supervised Clustering Models for Clinical Risk Assessment. - Yongyang Huo; Francisco Azuaje; Paul J. McCullagh; Roy Harper (BIBE, 2006)

Computational Approaches to Supporting Large-Scale Analysis of Photoreceptor-Enriched Gene Expression. - Haiying Wang 001; Huiru Zheng; Francisco Azuaje (CBMS, 2006)

Incorporating Biological Domain Knowledge into Cluster Validity Assessment. - Nadia Bolshakova; Francisco Azuaje; Padraig Cunningham (EvoWorkshops, 2006)

Predictive Integration of Gene Ontology-Driven Similarity and Functional Interactions. - Francisco Azuaje; Haiying Wang 001; Huiru Zheng; Olivier Bodenreider; Alban Chesneau (ICDM Workshops, 2006)

Machine learning approaches to supporting the identification of photoreceptor-enriched genes based on expression data. - Haiying Wang 001; Huiru Zheng; David Simpson; Francisco Azuaje (BMC Bioinform., 2006)

An assessment of machine and statistical learning approaches to inferring networks of protein-protein interactions. - Fiona Browne; Haiying Wang 001; Huiru Zheng; Francisco Azuaje (J. Integr. Bioinform., 2006)

An assessment of recently published gene expression data analyses: reporting experimental design and statistical factors. - Peyman Jafari; Francisco Azuaje (BMC Medical Informatics Decis. Mak., 2006)

Supervised Statistical and Machine Learning Approaches to Inferring Pairwise and Module-Based Protein Interaction Networks. - Fiona Browne; Haiying Wang 001; Huiru Zheng; Francisco Azuaje (BIBE, 2007)

Self-Adaptive Neural Networks Based on a Poisson Approach for Knowledge Discovery. - Haiying Wang 001; Huiru Zheng; Francisco Azuaje (IJCAI, 2007)

Integration and analysis of heterogeneous microarray data sources for supporting drug target identification in atherosclerosis. - Anyela Camargo; Francisco Azuaje (BMC Syst. Biol., 2007)

Inferring Adaptive Regulation Thresholds and Association Rules from Gene Expression Data through Combinatorial Optimization Learning. - Ignacio Ponzoni; Francisco Azuaje; Juan Carlos Augusto; David H. Glass (IEEE ACM Trans. Comput. Biol. Bioinform., 2007)

Poisson-Based Self-Organizing Feature Maps and Hierarchical Clustering for Serial Analysis of Gene Expression Data. - Haiying Wang 001; Huiru Zheng; Francisco Azuaje (IEEE ACM Trans. Comput. Biol. Bioinform., 2007)

Reassessing the limit of data integration for the prediction of protein-protein interactions in Saccharomyces cerevisiae. - Fiona Browne; Haiying Wang 001; Huiru Zheng; Francisco Azuaje (CIBCB, 2008)

Clustering-based approaches to SAGE data mining. - Haiying Wang 001; Huiru Zheng; Francisco Azuaje (BioData Min., 2008)

Computational prediction of protein interaction networks through supervised classification techniques. - Fiona Browne; Haiying Wang 001; Huiru Zheng; Francisco Azuaje (Int. J. Funct. Informatics Pers. Medicine, 2008)

Permutation - based statistical tests for multiple hypotheses. - Anyela Camargo; Francisco Azuaje; Haiying Wang 001; Huiru Zheng (Source Code Biol. Medicine, 2008)

Improving Pattern Discovery and Visualization of SAGE Data Through Poisson-Based Self-Adaptive Neural Networks. - Huiru Zheng; Haiying Wang 001; Francisco Azuaje (IEEE Trans. Inf. Technol. Biomed., 2008)

Special Section on Machine Intelligence Approaches to Systems Biology. - Gary B. Fogel; Eric Bullinger; S. F. Su; Francisco Azuaje (IEEE Trans. Syst. Man Cybern. Part B, 2008)

A standard-compliant global map of the bile acid/xenobiotic signaling network: Construction and automated query processing. - Oliver Schmidt; José López; Francisco Azuaje; Paul Thompson; Martin T. Swain; Werner Dubitzky (BIOCOMP, 2009)

Assessing the impact of network depth on the analysis of PPI networks: A case study. - Jaine K. Blayney; Haiying Wang 001; Huiru Zheng; Francisco Azuaje (CIBCB, 2009)

Assessing the Most Effective Depth for PPI Analysis. - Jaine K. Blayney; Huiru Zheng; Haiying Wang 001; Francisco Azuaje (IJCBS, 2009)

Computational biology for cardiovascular biomarker discovery. - Francisco Azuaje; Yvan Devaux; Daniel R. Wagner (Briefings Bioinform., 2009)

GRIP: A web-based system for constructing Gold Standard datasets for protein-protein interaction prediction. - Fiona Browne; Haiying Wang 001; Huiru Zheng; Francisco Azuaje (Source Code Biol. Medicine, 2009)

Machine Learning Techniques for the Automated Classification of Adhesin-Like Proteins in the Human Protozoan Parasite Trypanosoma cruzi. - Ana M. González; Francisco Azuaje; Jose L. Ramirez; Jose F. da Silveira; José R. Dorronsoro (IEEE ACM Trans. Comput. Biol. Bioinform., 2009)

seGOsa: Software environment for gene ontology-driven similarity assessment. - Huiru Zheng; Francisco Azuaje; Haiying Wang 001 (BIBM, 2010)

From Experimental Approaches to Computational Techniques: A Review on the Prediction of Protein-Protein Interactions. - Fiona Browne; Huiru Zheng; Haiying Wang 001; Francisco Azuaje (Adv. Artif. Intell., 2010)

Ontology- and graph-based similarity assessment in biological networks. - Haiying Wang 001; Huiru Zheng; Francisco Azuaje (Bioinform., 2010)

Identification of potential targets in biological signalling systems through network perturbation analysis. - Francisco Azuaje; Yvan Devaux; Daniel R. Wagner (Biosyst., 2010)

Coordinated modular functionality and prognostic potential of a heart failure biomarker-driven interaction network. - Francisco Azuaje; Yvan Devaux; Daniel R. Wagner (BMC Syst. Biol., 2010)

A knowledge-driven probabilistic framework for the prediction of protein-protein interaction networks. - Fiona Browne; Haiying Wang 001; Huiru Zheng; Francisco Azuaje (Comput. Biol. Medicine, 2010)

Multi-level integrative analysis of Protein - Protein Interaction networks: connecting completeness, depth and robustness. - Jaine K. Blayney; Huiru Zheng; Haiying Wang 001; Francisco Azuaje (Int. J. Comput. Biol. Drug Des., 2010)

Transcriptional networks characterize ventricular dysfunction after myocardial infarction: A proof-of-concept investigation. - Francisco Azuaje; Yvan Devaux; Melanie Vausort; Céline Yvorra; Daniel R. Wagner (J. Biomed. Informatics, 2010)

eNelator: A simulation system for large-scale vulnerability analysis of species-, disease- and process-specific protein networks. - Huiru Zheng; Haiying Wang 001; Francisco Azuaje (J. Comput. Sci., 2010)

Integration of Gene Ontology-based similarities for supporting analysis of protein-protein interaction networks. - Haiying Wang 001; Huiru Zheng; Fiona Browne; David H. Glass; Francisco Azuaje (Pattern Recognit. Lett., 2010)

Computational discrete models of tissue growth and regeneration. - Francisco Azuaje (Briefings Bioinform., 2011)

Prognostic transcriptional association networks: a new supervised approach based on regression trees. - Isabel A. Nepomuceno-Chamorro; Francisco Azuaje; Yvan Devaux; Petr V. Nazarov; Arnaud Muller; Jesús S. Aguilar-Ruiz; Daniel R. Wagner (Bioinform., 2011)

Predictive integration of gene functional similarity and co-expression defines treatment response of endothelial progenitor cells. - Francisco Azuaje; Haiying Wang 001; Huiru Zheng; Frédérique Léonard; Magali Rolland-Turner; Lu Zhang 026; Yvan Devaux; Daniel R. Wagner (BMC Syst. Biol., 2011)

Systems-based biological concordance and predictive reproducibility of gene set discovery methods in cardiovascular disease. - Francisco Azuaje; Huiru Zheng; Anyela Camargo; Haiying Wang 001 (J. Biomed. Informatics, 2011)

Drug-target network in myocardial infarction: A structural analysis. - Haiying Wang 001; Huiru Zheng; Francisco Azuaje; Xing-Ming Zhao (BIBM, 2012)

Gene set analysis in the cloud. - Lu Zhang 026; Shengchang Gu; Yuan Liu; Bingqiang Wang; Francisco Azuaje (Bioinform., 2012)

Bioinformatics as a driver, not a passenger, of translational biomedical research: Perspectives from the 6th Benelux bioinformatics conference. - Francisco Azuaje; Michaël Heymann; Anne-Marie Ternes; Anke Wienecke-Baldacchino; Daniel Struck; Danièle Moes; Reinhard Schneider 002 (J. Clin. Bioinform., 2012)

Detection of protein complexes in protein interaction networks is improved through network-driven functional homogeneity analysis. - Haiying Wang 001; Huiru Zheng; Francisco Azuaje (BIBM, 2013)

Correlating adverse drug reactions with biological pathways in humans. - Huiru Zheng; Haiying Wang 001; Hua Xu 001; Zhongming Zhao; Francisco Azuaje (BIBM, 2013)

An information theoretic approach to assessing gene-ontology-driven similarity and its application. - Haiying Wang 001; Francisco Azuaje; Huiru Zheng (Int. J. Data Min. Bioinform., 2014)

Computational models for predicting drug responses in cancer research. - Francisco Azuaje (Briefings Bioinform., 2017)

A Network-Based Embedding Method for Drug-Target Interaction Prediction. - Poorya Parvizi; Francisco Azuaje; Evropi Theodoratou; Saturnino Luz (EMBC, 2020)

DrDimont: explainable drug response prediction from differential analysis of multi-omics networks. - Pauline Hiort; Julian Hugo; Justus Zeinert; Nataniel Müller; Spoorthi Kashyap; Jagath C. Rajapakse; Francisco Azuaje; Bernhard Y. Renard; Katharina Baum (Bioinform., 2022)