LamBaDa: an artificial environment to study the interaction between evolution and learning. - Marília Oliveira; Jorge Barreiros; Ernesto Costa; Francisco Baptista Pereira (CEC, 1999)

Busy Beaver - The Influence of Representation. - Penousal Machado; Francisco Baptista Pereira; Amílcar Cardoso; Ernesto Costa (EuroGP, 1999)

Too busy to learn [individual learning interaction with evolutionary algorithm in Busy Beaver problem]. - Francisco Baptista Pereira; Penousal Machado; Ernesto Costa; Amílcar Cardoso; Alberto Ochoa-Rodríguez; Roberto Santana 001; Marta Soto (CEC, 2000)

Probabilistic Evolution and the Busy Beaver Problem. - Roberto Santana 001; Alberto Ochoa-Rodríguez; Marta Soto; Francisco Baptista Pereira; Penousal Machado; Ernesto Costa; Amílcar Cardoso (GECCO, 2000)

The Influence of Learning in the Behaviour of Information Retrieval Adaptive Agents. - Francisco Baptista Pereira; Ernesto Costa (SAC (1), 2000)

The Influence of Learning in the Evolution of Busy Beavers. - Francisco Baptista Pereira; Ernesto Costa (EvoWorkshops, 2001)

GVR: A New Genetic Representation for the Vehicle Routing Problem. - Francisco Baptista Pereira; Jorge Tavares; Penousal Machado; Ernesto Costa (AICS, 2002)

Vehicle Routing Problem: Doing It The Evolutionary Way. - Penousal Machado; Jorge Tavares; Francisco Baptista Pereira; Ernesto Costa (GECCO, 2002)

Golomb Rulers: The Advantage of Evolution. - Francisco Baptista Pereira; Jorge Tavares; Ernesto Costa (EPIA, 2003)

On the Influence of GVR in Vehicle Routing. - Jorge Tavares; Francisco Baptista Pereira; Penousal Machado; Ernesto Costa (SAC, 2003)

Understanding the role of insertion and correction in the evolution of Golomb rulers. - Jorge Tavares; Francisco B. Pereira; Ernesto Costa (IEEE Congress on Evolutionary Computation, 2004)

On the Evolution of Evolutionary Algorithms. - Jorge Tavares; Penousal Machado; Amílcar Cardoso; Francisco Baptista Pereira; Ernesto Costa (EuroGP, 2004)

Evolving Golomb Rulers. - Jorge Tavares; Francisco Baptista Pereira; Ernesto Costa (GECCO (2), 2004)

Analysis of Locality in Hybrid Evolutionary Cluster Optimization. - Francisco B. Pereira; Jorge M. C. Marques; Tiago Leitão; Jorge Tavares (IEEE Congress on Evolutionary Computation, 2006)

The Role of Representation on the Multidimensional Knapsack Problem by means of Fitness Landscape Analysis. - Jorge Tavares; Francisco Baptista Pereira; Ernesto Costa (IEEE Congress on Evolutionary Computation, 2006)

Niching techniques: a study on the cluster geometry optimization problem. - Tiago Leitão; Francisco Baptista Pereira; Jorge Tavares; Ernesto Costa (GECCO, 2007)

Golomb Rulers: A fitness landscape analysis. - Jorge Tavares; Francisco Baptista Pereira; Ernesto Costa (IEEE Congress on Evolutionary Computation, 2008)

A Self-Adaptive Evolutionary Algorithm for Cluster Geometry Optimization. - Francisco Baptista Pereira; Jorge M. C. Marques (HIS, 2008)

A Hybrid Evolutionary Algorithm for Cluster Geometry Optimization: The Importance of Structural Elitism. - Francisco Baptista Pereira; Jorge M. C. Marques (HIS, 2008)

Designing Efficient Evolutionary Algorithms for Cluster Optimization: A Study on Locality. - Francisco Baptista Pereira; Jorge M. C. Marques; Tiago Leitão; Jorge Tavares (Advances in Metaheuristics for Hard Optimization, 2008)

Multidimensional Knapsack Problem: A Fitness Landscape Analysis. - Jorge Tavares; Francisco Baptista Pereira; Ernesto Costa (IEEE Trans. Syst. Man Cybern. Part B, 2008)

MC-ANT: A Multi-Colony Ant Algorithm. - Leonor Albuquerque Melo; Francisco Baptista Pereira; Ernesto Costa (Artificial Evolution, 2009)

A study on diversity for cluster geometry optimization. - Francisco Baptista Pereira; Jorge M. C. Marques (Evol. Intell., 2009)

Towards an effective evolutionary approach for binary Lennard-Jones clusters. - Francisco Baptista Pereira; Jorge M. C. Marques (IEEE Congress on Evolutionary Computation, 2010)

Evolving Strategies for Updating Pheromone Trails: A Case Study with the TSP. - Jorge Tavares; Francisco Baptista Pereira (PPSN (2), 2010)

How Different Are Two Chemical Structures? - Jorge M. C. Marques; J. L. Llanio-Trujillo; P. E. Abreu; Francisco Baptista Pereira (J. Chem. Inf. Model., 2010)

Designing Pheromone Update Strategies with Strongly Typed Genetic Programming. - Jorge Tavares; Francisco Baptista Pereira (EuroGP, 2011)

Towards the development of self-ant systems. - Jorge Tavares; Francisco Baptista Pereira (GECCO, 2011)

PSO-CGO: A Particle Swarm Algorithm for Cluster Geometry Optimization. - Nuno Lourenço 002; Francisco Baptista Pereira (Int. J. Nat. Comput. Res., 2011)

Enhancing cluster geometry optimization with Island Models. - António Leitão; Francisco Baptista Pereira; Penousal Machado (IEEE Congress on Evolutionary Computation, 2012)

Automatic Design of Ant Algorithms with Grammatical Evolution. - Jorge Tavares; Francisco Baptista Pereira (EuroGP, 2012)

DACCO: a discrete ant colony algorithm to cluster geometry optimization. - Nuno Lourenço 002; Francisco Baptista Pereira (GECCO, 2012)

Evolving evolutionary algorithms. - Nuno Lourenço 002; Francisco Baptista Pereira; Ernesto Costa (GECCO (Companion), 2012)

Learning Selection Strategies for Evolutionary Algorithms. - Nuno Lourenço 002; Francisco B. Pereira; Ernesto Costa (Artificial Evolution, 2013)

Effective Multi-caste Ant Colony System for Large Dynamic Traveling Salesperson Problems. - Leonor Albuquerque Melo; Francisco B. Pereira; Ernesto Costa (Artificial Evolution, 2013)

The importance of the learning conditions in hyper-heuristics. - Nuno Lourenço 002; Francisco Baptista Pereira; Ernesto Costa (GECCO, 2013)

Multi-caste Ant Colony Algorithm for the Dynamic Traveling Salesperson Problem. - Leonor Albuquerque Melo; Francisco Baptista Pereira; Ernesto Costa (ICANNGA, 2013)

A detailed investigation on the global minimum structures of mixed rare-gas clusters: Geometry, energetics, and site occupancy. - Jorge M. C. Marques; Francisco Baptista Pereira (J. Comput. Chem., 2013)

Extended Experiments with Ant Colony Optimization with Heterogeneous Ants for Large Dynamic Traveling Salesperson Problems. - Leonor Albuquerque Melo; Francisco B. Pereira; Ernesto Costa (ICCSA (Workshops/Short Papers/Posters), 2014)

SGE: A Structured Representation for Grammatical Evolution. - Nuno Lourenço 002; Francisco B. Pereira; Ernesto Costa (Artificial Evolution, 2015)

The Optimization Ability of Evolved Strategies. - Nuno Lourenço 002; Francisco B. Pereira; Ernesto Costa (EPIA, 2015)

Local Search for Multiobjective Multiple Sequence Alignment. - Maryam Abbasi; Luís Paquete; Francisco B. Pereira (IWBBIO (2), 2015)

Island models for cluster geometry optimization: how design options impact effectiveness and diversity. - António Leitão; Francisco Baptista Pereira; Penousal Machado (J. Glob. Optim., 2015)

An Evolutionary Approach to the Full Optimization of the Traveling Thief Problem. - Nuno Lourenço 002; Francisco Baptista Pereira; Ernesto Costa (EvoCOP, 2016)

Unveiling the properties of structured grammatical evolution. - Nuno Lourenço 002; Francisco B. Pereira; Ernesto Costa (Genet. Program. Evolvable Mach., 2016)

A Comparative Study of Different Grammar-Based Genetic Programming Approaches. - Nuno Lourenço 002; Joaquim Ferrer; Francisco Baptista Pereira; Ernesto Costa (EuroGP, 2017)

GAFit: A general-purpose, user-friendly program for fitting potential energy surfaces. - Roberto Rodríguez-Fernández; Francisco B. Pereira; Jorge M. C. Marques; Emilio Martínez-Núñez; Saulo A. Vázquez (Comput. Phys. Commun., 2017)

Structured Grammatical Evolution: A Dynamic Approach. - Nuno Lourenço 002; Filipe Assunção; Francisco B. Pereira; Ernesto Costa; Penousal Machado (Handbook of Grammatical Evolution, 2018)

FERMAT: Feature Engineering with Grammatical Evolution. - Mariana Monteiro; Nuno Lourenço 002; Francisco B. Pereira (EPIA, 2021)

Capturing the Narrative: A Deep Learning Pipeline for Comics Sequences. - Goncalo Marouvo; Francisco B. Pereira (IbPRIA (2), 2025)