CSA: An efficient algorithm to improve circular DNA multiple alignment. - Francisco Fernandes; Luísa Pereira; Ana T. Freitas (BMC Bioinform., 2009)

Efficient alignment of pyrosequencing reads for re-sequencing applications. - Francisco Fernandes; Paulo G. S. da Fonseca 002; Luís M. S. Russo; Arlindo L. Oliveira; Ana T. Freitas (BMC Bioinform., 2011)

Parallel efficient aligner of pyrosequencing reads. - Miguel E. Coimbra; Francisco Fernandes; Luís M. S. Russo; Ana T. Freitas (EuroMPI, 2013)

slaMEM: efficient retrieval of maximal exact matches using a sampled LCP array. - Francisco Fernandes; Ana T. Freitas (Bioinform., 2014)

An Experimental Shape Matching Approach for Protein Docking. - Francisco Fernandes; Alfredo Ferreira (3DOR@Eurographics, 2016)

Geometric Detection Algorithms for Cavities on Protein Surfaces in Molecular Graphics: A Survey. - Tiago M. C. Simões; Daniel Simões Lopes; Sérgio Dias; Francisco Fernandes; João Pereira 001; Joaquim A. Jorge; Chandrajit Bajaj; Abel João Padrão Gomes (Comput. Graph. Forum, 2017)

Friendship-based Routing Protocol for Delay-Tolerant Networks. - Francisco Fernandes; Naércio Magaia; Paulo Rogério Pereira (ITST, 2018)

SpliceTAPyR - An Efficient Method for Transcriptome Alignment. - Andreia Sofia Teixeira; Francisco Fernandes; Alexandre P. Francisco (Int. J. Found. Comput. Sci., 2018)

A Deep Learning Approach to Recognize Human Activity Using Inertial Sensors and Motion Capture Systems. - Milagros Jaén-Vargas; Karla Miriam Reyes Leiva; Francisco Fernandes; Sérgio Barroso Gonçalves; Miguel Tavares Silva; Daniel Simões Lopes; José Javier Serrano Olmedo (FSDM, 2021)

Effects of sliding window variation in the performance of acceleration-based human activity recognition using deep learning models. - Milagros Jaén-Vargas; Karla Miriam Reyes Leiva; Francisco Fernandes; Sérgio Barroso Gonçalves; Miguel Tavares Silva; Daniel Simões Lopes; José Javier Serrano Olmedo (PeerJ Comput. Sci., 2022)

CSA-MEM: Enhancing Circular DNA Multiple Alignment Through Text Indexing Algorithms. - André Salgado; Francisco Fernandes; Ana Teresa Freitas (ISBRA, 2023)

Mystery in the Ecological Park: An Interactive Narrative to Promote Interaction with Biodiversity. - André Freitas; Francisco Fernandes; Mara Dionísio; Sandra Câmara Olim (ICEC, 2023)

Sticks and STONES may build my bones: Deep learning reconstruction of limb rotations in stick figures. - Francisco Fernandes; Ivo Roupa; Sérgio Barroso Gonçalves; Gonçalo Moita; Miguel Tavares da Silva; João Pereira 001; Joaquim Jorge 001; Richard R. Neptune; Daniel Simões Lopes (Pattern Recognit. Lett., 2023)

Editorial for the Special Issue "Radar Techniques for Structures Characterization and Monitoring". - Francisco Fernandes; Mezgeen Rasol; Gilda Schirinzi; Feng Zhou (Remote. Sens., 2023)

Microbiome Classification in Colon Cancer Patients Using Chaos Game Representations and CNN Models. - Javier Montoya; Francisco Fernandes; Ana Teresa Freitas (IWBBIO (2), 2024)

SelfReDepth: Self-Supervised Real-Time Depth Restoration for Consumer-Grade Sensors. - Alexandre Duarte; Francisco Fernandes; João M. Pereira 001; Catarina Moreira; Jacinto C. Nascimento; Joaquim Jorge 001 (CoRR, 2024)

Selfredepth. - Alexandre Duarte; Francisco Fernandes; João M. Pereira 001; Catarina Moreira; Jacinto C. Nascimento; Joaquim Jorge 001 (J. Real Time Image Process., 2024)