Spatial Bistability Generates hunchback Expression Sharpness in the Drosophila Embryo. - Francisco J. P. Lopes; Fernando M. C. Vieira; David M. Holloway; Paulo Mascarello Bisch; Alexander V. Spirov (PLoS Comput. Biol., 2008)

Multi-q Analysis of Image Patterns - Ricardo Fabbri; Wesley Nunes Gonçalves; Francisco J. P. Lopes; Odemir Martinez Bruno (CoRR, 2011)

Gene Expression Noise in Spatial Patterning: hunchback Promoter Structure Affects Noise Amplitude and Distribution in Drosophila Segmentation. - David M. Holloway; Francisco J. P. Lopes; Luciano da Fontoura Costa; Bruno Augusto Nassif Travençolo; Nina Golyandina; Konstantin Usevich; Alexander V. Spirov (PLoS Comput. Biol., 2011)

Measuring Gene Expression Noise in Early Drosophila Embryos: The Highly Dynamic Compartmentalized Micro-environment of the Blastoderm Is One of the Main Sources of Noise. - Alexander V. Spirov; Nina Golyandina; David M. Holloway; Theodore Alexandrov; Ekaterina N. Spirova; Francisco J. P. Lopes (EvoBIO, 2012)

Measuring Gene Expression Noise in Early Drosophila Embryos: Nucleus-to-nucleus Variability. - Nina Golyandina; David M. Holloway; Francisco J. P. Lopes; Alexander V. Spirov; Ekaterina N. Spirova; Konstantin Usevich (ICCS, 2012)

A Segmentation Method for Nuclei Identification from Sagittal Images of Drosophila melanogaster Embryos. - Daniela Justiniano de Sousa; Maira Arruda Cardoso; Paulo Mascarello Bisch; Francisco José Pereira Lopes; Bruno Augusto Nassif Travençolo (WSCG, 2013)

Multi-q Pattern Classification of Polarization Curves - Ricardo Fabbri; Ivan N. Bastos; Francisco Duarte Moura Neto; Francisco J. P. Lopes; Wesley Nunes Gonçalves; Odemir Martinez Bruno (CoRR, 2013)

Automated standardization of images of Drosophila embryos. - Daniela Justiniano de Sousa; Maira Arruda Cardoso; Paulo Mascarello Bisch; Francisco José Pereira Lopes; Bruno Augusto Nassif Travençolo (J. Vis. Commun. Image Represent., 2020)

A reaction-diffusion network model predicts a dual role of Cactus/IκB to regulate Dorsal/NFκB nuclear translocation in Drosophila. - Claudio Daniel Tenorio de Barros; Maira Arruda Cardoso; Paulo Mascarello Bisch; Helena M. Araujo; Francisco J. P. Lopes (PLoS Comput. Biol., 2021)

Deep Learning-Based Segmentation of Nanomaterial Images Acquired via Scanning Electron Microscopy. - Ivânia Maria Lucinda De Donato; Juliana Do Nascimento Lunz; Fernanda Davi Marques; Bráulio Soares Archanjo; Francisco José Pereira Lopes; Gilson Antonio Giraldi (RITA, 2025)