ANOLEA: A WWW Server to Assess Protein Structures. - Francisco Melo 001; Damien Devos; Eric Depiereux; Ernest Feytmans (ISMB, 1997)

Comparison of different melting temperature calculation methods for short DNA sequences . - Alejandro Panjkovich; Francisco Melo 001 (Bioinform., 2005)

dnaMATE: a consensus melting temperature prediction server for short DNA sequences. - Alejandro Panjkovich; Tomás Norambuena; Francisco Melo 001 (Nucleic Acids Res., 2005)

Accurate and unambiguous tag-to-gene mapping in serial analysis of gene expression. - Rodrigo Malig; Cristian Varela; Eduardo Agosin; Francisco Melo 001 (BMC Bioinform., 2006)

MODBASE: a database of annotated comparative protein structure models and associated resources. - Ursula Pieper 001; Narayanan Eswar; Fred P. Davis; Hannes Braberg; Mallur S. Madhusudhan; Andrea Rossi 005; Marc A. Martí-Renom; Rachel Karchin; Ben M. Webb; David Eramian; Min-Yi Shen; Libusha Kelly; et al. (Nucleic Acids Res., 2006)

SAGExplore: a web server for unambiguous tag mapping in serial analysis of gene expression oriented to gene discovery and annotation. - Tomás Norambuena; Rodrigo Malig; Francisco Melo 001 (Nucleic Acids Res., 2007)

StAR: a simple tool for the statistical comparison of ROC curves. - Ismael A. Vergara; Tomás Norambuena; Evandro Ferrada; Alex W. Slater; Francisco Melo 001 (BMC Bioinform., 2008)

Interactive software tool to comprehend the calculation of optimal sequence alignments with dynamic programming. - Ignacio L. Ibarra; Francisco Melo 001 (Bioinform., 2010)

The Protein-DNA Interface database. - Tomás Norambuena; Francisco Melo 001 (BMC Bioinform., 2010)

All-atom knowledge-based potential for RNA structure prediction and assessment. - Emidio Capriotti; Tomás Norambuena; Marc A. Martí-Renom; Francisco Melo 001 (Bioinform., 2011)

WebRASP: a server for computing energy scores to assess the accuracy and stability of RNA 3D structures. - Tomás Norambuena; Jorge F. Cares; Emidio Capriotti; Francisco Melo 001 (Bioinform., 2013)

Towards the development of standardized methods for comparison, ranking and evaluation of structure alignments. - Alex W. Slater; Javier I. Castellanos; Manfred J. Sippl; Francisco Melo 001 (Bioinform., 2013)

PDIviz: analysis and visualization of protein-DNA binding interfaces. - Judemir Ribeiro; Francisco Melo 001; Andreas Schüller (Bioinform., 2015)

Efficient and automated large-scale detection of structural relationships in proteins with a flexible aligner. - Fernando I. Gutiérrez; Felipe Rodriguez-Valenzuela; Ignacio L. Ibarra; Damien P. Devos; Francisco Melo 001 (BMC Bioinform., 2016)

Calculation of accurate interatomic contact surface areas for the quantitative analysis of non-bonded molecular interactions. - Judemir Ribeiro; Carlos Ríos-Vera; Francisco Melo 001; Andreas Schüller (Bioinform., 2019)