Concise, intelligible, and approximate profiling of multiple classes. - Raúl E. Valdés-Pérez; Francisco Pereira 001; Vladimir Pericliev (Int. J. Hum. Comput. Stud., 2000)

Distinguishing Natural Language Processes on the Basis of fMRI-Measured Brain Activation. - Francisco Pereira 001; Marcel Adam Just; Tom M. Mitchell (PKDD, 2001)

Classifying Instantaneous Cognitive States from fMRI Data. - Tom M. Mitchell; Rebecca A. Hutchinson; Marcel Adam Just; Radu Stefan Niculescu; Francisco Pereira 001; Xuerui Wang (AMIA, 2003)

Detecting Significant Multidimensional Spatial Clusters. - Daniel B. Neill; Andrew W. Moore 001; Francisco Pereira 001; Tom M. Mitchell (NIPS, 2004)

Learning to Decode Cognitive States from Brain Images. - Tom M. Mitchell; Rebecca A. Hutchinson; Radu Stefan Niculescu; Francisco Pereira 001; Xuerui Wang; Marcel Adam Just; Sharlene D. Newman (Mach. Learn., 2004)

The support vector decomposition machine. - Francisco Pereira 001; Geoffrey J. Gordon (ICML, 2006)

Closed-form supervised dimensionality reduction with generalized linear models. - Irina Rish; Genady Grabarnik; Guillermo A. Cecchi; Francisco Pereira 001; Geoffrey J. Gordon (ICML, 2008)

Machine learning classifiers and fMRI: A tutorial overview. - Francisco Pereira 001; Tom M. Mitchell; Matthew M. Botvinick (NeuroImage, 2009)

Classification of functional magnetic resonance imaging data using informative pattern features. - Francisco Pereira 001; Matthew M. Botvinick (KDD, 2011)

A topographic latent source model for fMRI data. - Samuel Gershman; David M. Blei; Francisco Pereira 001; Kenneth A. Norman (NeuroImage, 2011)

Information mapping with pattern classifiers: A comparative study. - Francisco Pereira 001; Matthew M. Botvinick (NeuroImage, 2011)

A systematic approach to extracting semantic information from functional MRI data. - Francisco Pereira 001; Matthew M. Botvinick (NIPS, 2012)

Simultaneous label fusion with vessel preserving for bone removal in CT angiography scans. - Lei Yuan; Li Zhang 024; Hendrik Ditt; Vincent Ordy; Francisco Pereira 001; Christophe Chefd'Hotel (EMBC, 2013)

Simitar: Simplified Searching of Statistically Significant Similarity Structure. - Francisco Pereira 001; Matthew M. Botvinick (PRNI, 2013)

Creating Group-Level Functionally-Defined Atlases for Diagnostic Classification. - Francisco Pereira 001; Jennifer M. Walz; Hasan Ertan Çetingül; Sandra Sudarsky; Mariappan S. Nadar; Ruchika Prakash (PRNI, 2013)

Using Wikipedia to learn semantic feature representations of concrete concepts in neuroimaging experiments. - Francisco Pereira 001; Matthew M. Botvinick; Greg Detre (Artif. Intell., 2013)

Distributed Weight Consolidation: A Brain Segmentation Case Study. - Patrick McClure; Charles Y. Zheng; Jakub Kaczmarzyk; John Rogers-Lee; Satrajit S. Ghosh; Dylan Nielson; Peter A. Bandettini; Francisco Pereira 001 (NeurIPS, 2018)

Semantic projection: recovering human knowledge of multiple, distinct object features from word embeddings. - Gabriel Grand; Idan Asher Blank; Francisco Pereira 001; Evelina Fedorenko (CoRR, 2018)

Parallel Weight Consolidation: A Brain Segmentation Case Study. - Patrick McClure; Charles Y. Zheng; Francisco Pereira 001; Jakub Kaczmarzyk; John Rogers-Lee; Dylan Nielson; Peter A. Bandettini (CoRR, 2018)

Knowing what you know in brain segmentation using deep neural networks. - Patrick McClure; Nao Rho; John A. Lee; Jakub R. Kaczmarzyk; Charles Y. Zheng; Satrajit S. Ghosh; Dylan Nielson; Adam G. Thomas; Peter A. Bandettini; Francisco Pereira 001 (CoRR, 2018)

Revealing interpretable object representations from human behavior. - Charles Y. Zheng; Francisco Pereira 001; Chris I. Baker; Martin N. Hebart (ICLR (Poster), 2019)

Knowing What You Know in Brain Segmentation Using Bayesian Deep Neural Networks. - Patrick McClure; Nao Rho; John A. Lee; Jakub R. Kaczmarzyk; Charles Y. Zheng; Satrajit S. Ghosh; Dylan Nielson; Adam G. Thomas; Peter A. Bandettini; Francisco Pereira 001 (Frontiers Neuroinformatics, 2019)

Imaging the spontaneous flow of thought: Distinct periods of cognition contribute to dynamic functional connectivity during rest. - Javier Gonzalez-Castillo; César Caballero-Gaudes; Natasha Topolski; Daniel A. Handwerker; Francisco Pereira 001; Peter A. Bandettini (NeuroImage, 2019)

Evaluating Adversarial Robustness for Deep Neural Network Interpretability using fMRI Decoding. - Patrick McClure; Dustin Moraczewski; Ka Chun Lam; Adam G. Thomas; Francisco Pereira 001 (CoRR, 2020)

Understanding Object Affordances Through Verb Usage Patterns. - Ka Chun Lam; Francisco Pereira 001; Maryam Vaziri-Pashkam; Kristin Woodard; Emalie McMahon (CoRR, 2020)

A Deep Neural Network Tool for Automatic Segmentation of Human Body Parts in Natural Scenes. - Patrick McClure; Gabrielle Reimann; Michal Ramot; Francisco Pereira 001 (CoRR, 2020)

Mental representations of objects reflect the ways in which we interact with them. - Ka Chun Lam; Francisco Pereira 001; Maryam Vaziri-Pashkam; Kristin Woodard; Emalie McMahon (CogSci, 2021)

VICE: Variational Interpretable Concept Embeddings. - Lukas Muttenthaler; Charles Y. Zheng; Patrick McClure; Robert A. Vandermeulen; Martin N. Hebart; Francisco Pereira 001 (NeurIPS, 2022)

Testing for context-dependent changes in neural encoding in naturalistic experiments. - Yenho Chen; Carl W. Harris; Xiaoyu Ma; Zheng Li; Francisco Pereira 001; Charles Y. Zheng (CoRR, 2022)

Interpretable factorization of clinical questionnaires to identify latent factors of psychopathology. - Ka Chun Lam; Bridget W. Mahony; Armin Raznahan; Francisco Pereira 001 (CoRR, 2023)

Causal Inference in the Closed-Loop: Marginal Structural Models for Sequential Excursion Effects. - Alexander Levis; Gabriel Loewinger; Francisco Pereira 001 (NeurIPS, 2024)

Enhancing Infant Crying Detection with Gradient Boosting for Improved Emotional and Mental Health Diagnostics. - Kyunghun Lee; Lauren M. Henry; Eleanor Hansen; Elizabeth Tandilashvili; Lauren S. Wakschlag; Elizabeth Norton; Daniel S. Pine; Melissa A. Brotman; Francisco Pereira 001 (CoRR, 2024)

More Experts Than Galaxies: Conditionally-Overlapping Experts with Biologically-Inspired Fixed Routing. - Sagi Shaier; Francisco Pereira 001; Katharina von der Wense; Lawrence Hunter; Matt Jones 002 (ICLR, 2025)