Inferring Gene Ontology Category Membership via Gene Expression and Sequence Similarity Data Analysis. - Murilo Saraiva de Queiroz; Francisco Prosdocimi; Izabela Freire Goertzel; Francisco Pereira Lobo; Cassio Pennachin; Ben Goertzel (KR-MED, 2006)

Large scale clustering of protein sequences with FORCE -A layout based heuristic for weighted cluster editing. - Tobias Wittkop; Jan Baumbach; Francisco Pereira Lobo; Sven Rahmann (BMC Bioinform., 2007)

KOMODO: a web tool for detecting and visualizing biased distribution of groups of homologous genes in monophyletic taxa. - Francisco Pereira Lobo; Maíra R. Rodrigues; Gisele O. L. Rodrigues; Heron O. Hilário; Raoni A. Souza; Andreas Tauch; Anderson Miyoshi; Glaura C. Franco; Vasco Ariston de Carvalho Azevedo; Glória R. Franco (Nucleic Acids Res., 2012)

Coevolved Positions Represent Key Functional Properties in the Trypsin-Like Serine Proteases Protein Family. - Marcelo Querino Lima Afonso; Néli José da Fonseca Jr.; Lucas Carrijo de Oliveira; Francisco Pereira Lobo; Lucas Bleicher (J. Chem. Inf. Model., 2020)

Organism-specific training improves performance of linear B-cell epitope prediction. - Jodie Ashford; João Reis-Cunha; Igor Lobo; Francisco Pereira Lobo; Felipe Campelo (Bioinform., 2021)

Cross-species prediction of essential genes in insects. - Giovanni Marques de Castro; Zandora Hastenreiter; Thiago Augusto Silva Monteiro; Thieres Tayroni Martins da Silva; Francisco Pereira Lobo (Bioinform., 2022)

Why are some plants taller? Researchers on the unveiling of genetic variation associated with complex quantitative phenotypes. - Giovanni Marques de Castro; Felipe Campelo; Francisco Pereira Lobo (Patterns, 2023)

CALANGO: A phylogeny-aware comparative genomics tool for discovering quantitative genotype-phenotype associations across species. - Jorge Augusto Hongo; Giovanni Marques de Castro; Alison Pelri Albuquerque Menezes; Agnello César Rios Picorelli; Thieres Tayroni Martins da Silva; Eddie Luidy Imada; Luigi Marchionni; Luiz-Eduardo Del-Bem; Anderson Vieira Chaves; Gabriel Magno de Freitas Almeida; Felipe Campelo; Francisco Pereira Lobo (Patterns, 2023)

The rise of taxon-specific epitope predictors. - Felipe Campelo; Francisco Pereira Lobo (Briefings Bioinform., 2024)

Phylogeny-aware linear B-cell epitope predictor detects targets associated with immune response to orthopoxviruses. - Felipe Campelo; Ana Laura Grossi de Oliveira; João Reis-Cunha; Vanessa Gomes Fraga; Pedro Henrique Bastos; Jodie Ashford; Anikó Ekárt; Talita Emile Ribeiro Adelino; Marcos Vinicius Ferreira Silva; Felipe Campos de Melo Iani; Augusto César Parreiras de Jesus; Daniella Castanheira Bartholomeu; et al. (Briefings Bioinform., 2024)