Local correlation of expression profiles with gene annotations-proof of concept for a general conciliatory method. - Francisco R. Pinto; L. Ashley Cowart; Yusuf A. Hannun; Bärbel Rohrer; Jonas S. Almeida (Bioinform., 2005)

Ranked Adjusted Rand: integrating distance and partition information in a measure of clustering agreement. - Francisco R. Pinto; João A. Carriço; Mário Ramirez; Jonas S. Almeida (BMC Bioinform., 2007)

Identifying Chemical Entities based on ChEBI. - Tiago Grego; Francisco R. Pinto; Francisco M. Couto (ICBO, 2012)

LASIGE: using Conditional Random Fields and ChEBI ontology. - Tiago Grego; Francisco R. Pinto; Francisco M. Couto (SemEval@NAACL-HLT, 2013)

TransNeT-CGP: A cluster-based comorbid gene prioritization by integrating transcriptomics and network-topological features. - K. R. Saranya; E. R. Vimina 001; Francisco R. Pinto (Comput. Biol. Chem., 2024)