WILMA - automated annotation of protein sequences. - Andreas Prlic; Francisco S. Domingues; Peter Lackner; Manfred J. Sippl (Bioinform., 2004)

Predicting protein structure classes from function predictions. - Ingolf Sommer; Jörg Rahnenführer; Francisco S. Domingues; Ulrik de Lichtenberg; Thomas Lengauer (Bioinform., 2004)

A new measure for functional similarity of gene products based on Gene Ontology. - Andreas Schlicker; Francisco S. Domingues; Jörg Rahnenführer; Thomas Lengauer (BMC Bioinform., 2006)

NOXclass: prediction of protein-protein interaction types. - Hongbo Zhu 001; Francisco S. Domingues; Ingolf Sommer; Thomas Lengauer (BMC Bioinform., 2006)

Conformational analysis of alternative protein structures. - Francisco S. Domingues; Jörg Rahnenführer; Thomas Lengauer (Bioinform., 2007)

Moment invariants as shape recognition technique for comparing protein binding sites. - Ingolf Sommer; Oliver Müller; Francisco S. Domingues; Oliver Sander; Joachim Weickert; Thomas Lengauer (Bioinform., 2007)

Structural Descriptors of gp120 V3 Loop for the Prediction of HIV-1 Coreceptor Usage. - Oliver Sander; Tobias Sing; Ingolf Sommer; Andrew J. Low; Peter K. Cheung; P. Richard Harrigan; Thomas Lengauer; Francisco S. Domingues (PLoS Comput. Biol., 2007)

Structural Descriptors of Protein-Protein Binding Sites. - Oliver Sander; Francisco S. Domingues; Hongbo Zhu 001; Thomas Lengauer; Ingolf Sommer (APBC, 2008)

Applications of semantic similarity measures. - Andreas Schlicker; Fidel Ramírez; Jörg Rahnenführer; Carola Huthmacher; Alejandro Pironti; Francisco S. Domingues; Thomas Lengauer; Mario Albrecht (Ontologies and Text Mining for Life Sciences, 2008)

Local Function Conservation in Sequence and Structure Space. - Nils Weinhold; Oliver Sander; Francisco S. Domingues; Thomas Lengauer; Ingolf Sommer (PLoS Comput. Biol., 2008)

Aligning Protein Structures Using Distance Matrices and Combinatorial Optimization. - Inken Wohlers; Lars Petzold; Francisco S. Domingues; Gunnar W. Klau (GCB, 2009)

PAUL: protein structural alignment using integer linear programming and Lagrangian relaxation. - Inken Wohlers; Lars Petzold; Francisco S. Domingues; Gunnar W. Klau (BMC Bioinform., 2009)

Towards optimal alignment of protein structure distance matrices. - Inken Wohlers; Francisco S. Domingues; Gunnar W. Klau (Bioinform., 2010)

Analysis of Physicochemical and Structural Properties Determining HIV-1 Coreceptor Usage. - Katarzyna Bozek; Thomas Lengauer; Saleta Sierra; Rolf Kaiser; Francisco S. Domingues (PLoS Comput. Biol., 2013)

FamAgg: an R package to evaluate familial aggregation of traits in large pedigrees. - Johannes Rainer; Daniel Taliun; Yuri D'Elia; Cristian Pattaro; Francisco S. Domingues; Christian X. Weichenberger (Bioinform., 2016)

A Web Resource for Levodopa-Induced Dyskinesia Genetics in Parkinson's Disease. - Hagen Blankenburg; Marika Falla; Christine Schwienbacher; Giovanni Fabbrini; Alfredo Berardelli; Peter P. Pramstaller; Francisco S. Domingues (Neuroinformatics, 2017)

Comparative assessment of different familial aggregation methods in the context of large and unstructured pedigrees. - Christian X. Weichenberger; Johannes Rainer; Cristian Pattaro; Peter P. Pramstaller; Francisco S. Domingues (Bioinform., 2019)