InterMap3D: predicting and visualizing co-evolving protein residues. - Rodrigo Gouveia-Oliveira; Francisco S. Roque; Rasmus Wernersson; Thomas Sicheritz-Pontén; Peter Wad Sackett; Anne Mølgaard; Anders Gorm Pedersen (Bioinform., 2009)

Deciphering Diseases and Biological Targets for Environmental Chemicals using Toxicogenomics Networks. - Karine Audouze; Agnieszka Sierakowska Juncker; Francisco S. Roque; Konrad Krysiak-Baltyn; Nils Weinhold; Olivier Taboureau; Thomas Skøt Jensen; Søren Brunak (PLoS Comput. Biol., 2010)

ChemProt: a disease chemical biology database. - Olivier Taboureau; Sonny Kim Nielsen; Karine Audouze; Nils Weinhold; Daniel Edsgärd; Francisco S. Roque; Irene Kouskoumvekaki; Alina Bora; Ramona Curpan; Thomas Skøt Jensen; Søren Brunak; Tudor I. Oprea (Nucleic Acids Res., 2011)

Using Electronic Patient Records to Discover Disease Correlations and Stratify Patient Cohorts. - Francisco S. Roque; Peter Bjødstrup Jensen; Henriette Schmock; Marlene Dalgaard; Massimo Andreatta; Thomas Folkmann Hansen; Karen Søeby; Søren Bredkjær; Anders Juul; Thomas Werge; Lars Juhl Jensen; Søren Brunak (PLoS Comput. Biol., 2011)