CODA (CrossOver Distribution Analyzer): quantitative characterization of crossover position patterns along chromosomes. - Franck Gauthier; Olivier C. Martin; Matthieu Falque (BMC Bioinform., 2011)

MSPminer: abundance-based reconstitution of microbial pan-genomes from shotgun metagenomic data. - Florian Plaza Oñate; Emmanuelle Le Chatelier; Mathieu Almeida; Alessandra C. L. Cervino; Franck Gauthier; Frédéric Magoulès; S. Dusko Ehrlich; Matthieu Pichaud (Bioinform., 2019)

SeSAM: software for automatic construction of order-robust linkage maps. - Adrien Vidal; Franck Gauthier; Willy Rodrigez; Nadège Guiglielmoni; Damien Leroux; Nicolas Chevrolier; Sylvain Jasson; Elise Tourrette; Olivier C. Martin; Matthieu Falque (BMC Bioinform., 2022)