STL-based Analysis of TRAIL-induced Apoptosis Challenges the Notion of Type I/Type II Cell Line Classification. - Szymon Stoma; Alexandre Donzé; François Bertaux; Oded Maler; Grégory Batt (PLoS Comput. Biol., 2013)

Modeling Dynamics of Cell-to-Cell Variability in TRAIL-Induced Apoptosis Explains Fractional Killing and Predicts Reversible Resistance. - François Bertaux; Szymon Stoma; Dirk Drasdo; Grégory Batt (PLoS Comput. Biol., 2014)

Cell-based multi-scale modeling for systems and synthetic biology : from stochastic gene expression in single cells to spatially organized cell populations. (Modélisation multi-échelle de cellule-centrée pour systèmes et biologie synthétique : de l'expression stochastique des gènes en cellule unique à l'espace organisé des populations de cellules). - François Bertaux (2016)

Abstracting the dynamics of biological pathways using information theory: a case study of apoptosis pathway. - Sucheendra K. Palaniappan; François Bertaux; Matthieu Pichené; Eric Fabre; Grégory Batt; Blaise Genest (Bioinform., 2017)

bayNorm: Bayesian gene expression recovery, imputation and normalization for single-cell RNA-sequencing data. - Wenhao Tang; François Bertaux; Philipp Thomas; Claire Stefanelli; Malika Saint; Samuel Marguerat; Vahid Shahrezaei (Bioinform., 2020)

A bacterial size law revealed by a coarse-grained model of cell physiology. - François Bertaux; Julius von Kügelgen; Samuel Marguerat; Vahid Shahrezaei (PLoS Comput. Biol., 2020)