Inference of Finite Automata: Reducing the Search Space with an Ordering of Pairs of States. - François Coste; Jacques Nicolas (ECML, 1998)

How Considering Incompatible State Mergings May Reduce the DFA Induction Search Tree. - François Coste; Jacques Nicolas (ICGI, 1998)

Efficient Ambiguity Detection in C-NFA, a Step Towards the Inference on Non Deterministic Automata. - François Coste; Daniel Fredouille (ICGI, 2000)

Unambiguous Automata Inference by Means of State-Merging Methods. - François Coste; Daniel Fredouille (ECML, 2003)

Mutually Compatible and Incompatible Merges for the Search of the Smallest Consistent DFA. - John Abela; François Coste; Sandro Spina (ICGI, 2004)

Introducing Domain and Typing Bias in Automata Inference. - François Coste; Daniel Fredouille; Christopher Kermorvant; Colin de la Higuera (ICGI, 2004)

The Omphalos Context-Free Grammar Learning Competition. - Bradford Starkie; François Coste; Menno van Zaanen (ICGI, 2004)

A Similar Fragments Merging Approach to Learn Automata on Proteins. - François Coste; Goulven Kerbellec (ECML, 2005)

Progressing the state-of-the-art in grammatical inference by competition: The Omphalos Context-Free Language Learning Competition. - Bradford Starkie; François Coste; Menno van Zaanen (AI Commun., 2005)

In-Place Update of Suffix Array while Recoding Words. - Matthias Gallé; Pierre Peterlongo; François Coste (Int. J. Found. Comput. Sci., 2009)

Choosing Word Occurrences for the Smallest Grammar Problem. - Rafael Carrascosa; François Coste; Matthias Gallé; Gabriel G. Infante López (LATA, 2010)

The Smallest Grammar Problem as Constituents Choice and Minimal Grammar Parsing. - Rafael Carrascosa; François Coste; Matthias Gallé; Gabriel G. Infante López (Algorithms, 2011)

Searching for smallest grammars on large sequences and application to DNA. - Rafael Carrascosa; François Coste; Matthias Gallé; Gabriel G. Infante López (J. Discrete Algorithms, 2012)

Locally Substitutable Languages for Enhanced Inductive Leaps. - François Coste; Gaëlle Garet; Jacques Nicolas (ICGI, 2012)

CyanoLyase: a database of phycobilin lyase sequences, motifs and functions. - Anthony Bretaudeau; François Coste; Florian Humily; Laurence Garczarek; Gildas Le Corguillé; Christophe Six; Morgane Ratin; Olivier Collin; Wendy M. Schluchter; Frédéric Partensky (Nucleic Acids Res., 2013)

Automated Enzyme Classification by Formal Concept Analysis. - François Coste; Gaëlle Garet; Agnès Groisillier; Jacques Nicolas; Thierry Tonon (ICFCA, 2014)

A bottom-up efficient algorithm learning substitutable languages from positive examples. - François Coste; Gaëlle Garet; Jacques Nicolas (ICGI, 2014)

Amplitude spectrum distance: measuring the global shape divergence of protein fragments. - Clovis Galiez; François Coste (BMC Bioinform., 2015)

VIRALpro: a tool to identify viral capsid and tail sequences. - Clovis Galiez; Christophe N. Magnan; François Coste; Pierre Baldi (Bioinform., 2016)

How to measure the topological quality of protein grammars? - Witold Dyrka; François Coste; Olgierd Unold; Lukasz Culer; Agnieszka Kaczmarek (CoRR, 2016)

Learning local substitutable context-free languages from positive examples in polynomial time and data by reduction. - François Coste; Jacques Nicolas (ICGI, 2018)

How to measure the topological quality of protein parse trees? - Mateusz Pyzik; François Coste; Witold Dyrka (ICGI, 2018)

Estimating probabilistic context-free grammars for proteins using contact map constraints. - Witold Dyrka; François Coste; Juliette Talibart (CoRR, 2018)

Deep learning languages: a key fundamental shift from probabilities to weights? - François Coste (CoRR, 2019)

PPalign: optimal alignment of Potts models representing proteins with direct coupling information. - Hugo Talibart; François Coste (BMC Bioinform., 2021)

Phylogenetic inference of the emergence of sequence modules and protein-protein interactions in the ADAMTS-TSL family. - Olivier Dennler; François Coste; Samuel Blanquart; Catherine Belleannée; Nathalie Théret (PLoS Comput. Biol., 2023)

Predicting enzymatic function of protein sequences with attention. - Nicolas Buton; François Coste; Yann Le Cunff (Bioinform., 2023)