The Good, the Bad and the Ugly: Ordinal and Symbolic Whisky Analysis. - François-Joseph Lapointe (Electron. Notes Discret. Math., 1999)

How to Account for Reticulation Events in Phylogenetic Analysis: A Comparison of Distance-Based Methods. - François-Joseph Lapointe (J. Classif., 2000)

How good can a consensus get? Assessing the reliability of consensus trees in phylogenetic studies. - François-Joseph Lapointe; Guy Cucumel (Bioconsensus, 2001)

Increasing phylogenetic accuracy with global congruence. - Claudine Levasseur; François-Joseph Lapointe (Bioconsensus, 2001)

A Generalized Permutation Model for the Analysis of Cross-Species Data. - François-Joseph Lapointe; Theodore Garland Jr. (J. Classif., 2001)

A weighted least-squares approach for inferring phylogenies from incomplete distance matrices. - Vladimir Makarenkov; François-Joseph Lapointe (Bioinform., 2004)

Choreogenetics: the generation of choreographic variants through genetic mutations and selection. - François-Joseph Lapointe (GECCO Workshops, 2005)

The dancing genome project: generation of a human-computer choreography using a genetic algorithm. - François-Joseph Lapointe; Martine Époque (ACM Multimedia, 2005)

A New Efficient Method for Assessing Missing Nucleotides in DNA Sequences in the Framework of a Generic Evolutionary Model. - Abdoulaye Baniré Diallo; Vladimir Makarenkov; Mathieu Blanchette; François-Joseph Lapointe (Data Science and Classification, 2006)

Assessing Congruence Among Ultrametric Distance Matrices. - Véronique Campbell; Pierre Legendre; François-Joseph Lapointe (J. Classif., 2009)

Using the stability of objects to determine the number of clusters in datasets. - Etienne Lord; Matthieu Willems; François-Joseph Lapointe; Vladimir Makarenkov (Inf. Sci., 2017)