A secondary and tertiary structure editor for nucleic acids. - Robert Cedergren; Daniel Gautheret; Guy Lapalme; François Major (Comput. Appl. Biosci., 1988)

FUS: a system to simulate conformational changes in biological macromolecules. - François Major; R. Feldmann; Guy Lapalme; Robert Cedergren (Comput. Appl. Biosci., 1988)

Pattern searching/alignment with RNA primary and secondary structures: an effective descriptor for tRNA. - Daniel Gautheret; François Major; Robert Cedergren (Comput. Appl. Biosci., 1990)

Domain Generating Functions for Solving Constraint Satisfaction Problems. - François Major; Guy Lapalme; Robert Cedergren (J. Funct. Program., 1991)

Constraint Satisfaction in Functional Programming. - François Major; Marcel Turcotte; Guy Lapalme (PPCP, 1993)

Symbolic Generation and Clustering of RNA 3-D Motifs. - Marielle Foucrault; François Major (ISMB, 1995)

Exploring the Conformations of Nucleic Acids. - Marcel Turcotte; Guy Lapalme; François Major (J. Funct. Program., 1995)

Parametrization of a force field for metals complexed to biomacromolecules: applications to Fe(II), Cu(II) and Pb(II). - Laurent David; Patricia Amara; Martin J. Field; François Major (J. Comput. Aided Mol. Des., 2002)

Building three-dimensional ribonucleic acid structures. - François Major (Comput. Sci. Eng., 2003)

The ERPIN server: an interface to profile-based RNA motif identification. - André Lambert; Jean-Fred Fontaine; Matthieu Legendre; Fabrice Leclerc; Emmanuelle Permal; François Major; Harald Putzer; Olivier Delfour; Bernard Michot; Daniel Gautheret (Nucleic Acids Res., 2004)

RKB: a Semantic Web knowledge base for RNA. - Jose Cruz-Toledo; Michel Dumontier; Marc Parisien; François Major (J. Biomed. Semant., 2010)

Towards 3D structure prediction of large RNA molecules: an integer programming framework to insert local 3D motifs in RNA secondary structure. - Vladimir Reinharz; François Major; Jérôme Waldispühl (Bioinform., 2012)

Evolution by Computational Selection. - Mohammed Shamrani; François Major; Jérôme Waldispühl (CoRR, 2015)

RNA-MoIP: prediction of RNA secondary structure and local 3D motifs from sequence data. - Jason Yao; Vladimir Reinharz; François Major; Jérôme Waldispühl (Nucleic Acids Res., 2017)

CAMAP: Artificial neural networks unveil the role of codon arrangement in modulating MHC-I peptides presentation. - Tariq Daouda; Maude Dumont-Lagacé; Albert Feghaly; Yahya Benslimane; Rébecca Panes; Mathieu Courcelles; Mohamed Benhammadi; Lea Harrington; Pierre Thibault; François Major; Yoshua Bengio; Etienne Gagnon; et al. (PLoS Comput. Biol., 2021)

Sequence-sensitive elastic network captures dynamical features necessary for miR-125a maturation. - Olivier Mailhot; Vincent Frappier; François Major; Rafael J. Najmanovich (PLoS Comput. Biol., 2022)

The DynaSig-ML Python package: automated learning of biomolecular dynamics-function relationships. - Olivier Mailhot; François Major; Rafael Najmanovich (Bioinform., 2023)