Searching gene transfers on Bacillus subtilis using hidden Markov models. - Laurent Bize; Florence Muri; Franck Samson; François Rodolphe; S. Dusko Ehrlich; Bernard Prun; Philippe Bessières (RECOMB, 1999)

Translation Conditional Models for Protein Coding Sequences. - François Rodolphe; Catherine Mathé (J. Comput. Biol., 2000)

AnovArray: a set of SAS macros for the analysis of variance of gene expression data. - Christelle Hennequet-Antier; Hélène Chiapello; Karine Piot; Séverine A. Degrelle; Isabelle Hue; Jean-Paul Renard; François Rodolphe; Stéphane Robin (BMC Bioinform., 2005)

Choosing the Optimal Hidden Markov Model for Secondary-Structure Prediction. - Juliette Martin; Jean-François Gibrat; François Rodolphe (IEEE Intell. Syst., 2005)

FUNYBASE: a FUNgal phYlogenomic dataBASE. - Sylvain Marthey; Gabriela Aguileta; François Rodolphe; Annie Gendrault; Tatiana Giraud; Elisabeth Fournier; Manuela Lopez-Villavicencio; Angélique Gautier; Marc-Henri Lebrun; Hélène Chiapello (BMC Bioinform., 2008)

Statistical Significance of Threading Scores. - Afshin Fayyaz Movaghar; Guillaume Launay; Sophie Schbath; Jean-François Gibrat; François Rodolphe (J. Comput. Biol., 2012)