Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing. - Rubén Sánchez 002; François Serra; Joaquín Tárraga; Ignacio Medina; José Carbonell; Luis Pulido; Alejandro de María; Salvador Capella-Gutiérrez; Jaime Huerta-Cepas; Toni Gabaldón; Joaquín Dopazo; Hernán Dopazo (Nucleic Acids Res., 2011)

Natural Selection on Functional Modules, a Genome-Wide Analysis. - François Serra; Leonardo Arbiza; Joaquín Dopazo; Hernán Dopazo (PLoS Comput. Biol., 2011)

Automatic analysis and 3D-modelling of Hi-C data using TADbit reveals structural features of the fly chromatin colors. - François Serra; Davide Baù; Mike Goodstadt; David Castillo; Guillaume J. Filion; Marc A. Martí-Renom (PLoS Comput. Biol., 2017)