Reads2Type: a web application for rapid microbial taxonomy identification. - Dhany Saputra; Simon Rasmussen; Mette V. Larsen; Nizar Haddad; Maria Sperotto; Frank Aarestrup; Ole Lund; Thomas Sicheritz-Pontén (BMC Bioinform., 2015)

Rapid and precise alignment of raw reads against redundant databases with KMA. - Philip T. L. C. Clausen; Frank Aarestrup; Ole Lund (BMC Bioinform., 2018)

The COMPARE Data Hubs. - Clara Amid; Nima Pakseresht; Nicole Silvester; Suran Jayathilaka; Ole Lund; Lukasz D. Dynovski; Bálint Á Pataki; Dávid Visontai; Basil Britto Xavier; Blaise T. F. Alako; Ariane Belka; Jose L. B. Cisneros; et al. (Database J. Biol. Databases Curation, 2019)

ARGprofiler - a pipeline for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets. - Hannah-Marie Martiny; Nikiforos Pyrounakis; Thomas Nordahl Petersen; Oksana Lukjancenko; Frank Aarestrup; Philip T. L. C. Clausen; Patrick Munk (Bioinform., 2024)