Structural Modeling of Protein Interactions by Analogy: Application to PSD-95. - Dmitry Korkin; Fred P. Davis; Frank Alber; Tinh Luong; Min-Yi Shen; Vladan Lucic; Mary B. Kennedy; Andrej Sali (PLoS Comput. Biol., 2006)

Integrative Structure Determination of Protein Assemblies by Satisfaction of Spatial Restraints. - Frank Alber; Brian T. Chait; Michael P. Rout; Andrej Sali (Protein-protein Interactions and Networks, 2008)

3D Rotation Invariant Features for the Characterization of Molecular Density Maps. - Min Xu; Shi-Hua Zhang; Frank Alber (BIBM, 2009)

A fast mathematical programming procedure for simultaneous fitting of assembly components into cryoEM density maps. - Shi-Hua Zhang; Daven Vasishtan; Min Xu; Maya Topf; Frank Alber (Bioinform., 2010)

Template-free detection of macromolecular complexes in cryo electron tomograms. - Min Xu; Martin Beck; Frank Alber (Bioinform., 2011)

High precision alignment of cryo-electron subtomograms through gradient-based parallel optimization. - Min Xu; Frank Alber (BMC Syst. Biol., 2012)

A Computational Approach to Increase Time Scales in Brownian Dynamics-Based Reaction-Diffusion Modeling. - Zachary Frazier; Frank Alber (J. Comput. Biol., 2012)

Automated target segmentation and real space fast alignment methods for high-throughput classification and averaging of crowded cryo-electron subtomograms. - Min Xu; Frank Alber (Bioinform., 2013)

Hi-Corrector: a fast, scalable and memory-efficient package for normalizing large-scale Hi-C data. - Wenyuan Li 006; Ke Gong; Qingjiao Li; Frank Alber; Xianghong Jasmine Zhou (Bioinform., 2015)

Simulating cryo electron tomograms of crowded cell cytoplasm for assessment of automated particle picking. - Long Pei; Min Xu; Zachary Frazier; Frank Alber (BMC Bioinform., 2016)