Learning an Approximation to Inductive Logic Programming Clause Evaluation. - Frank DiMaio; Jude W. Shavlik (ILP, 2004)

Pictorial Structures for Molecular Modeling: Interpreting Density Maps. - Frank DiMaio; Jude W. Shavlik; George N. Phillips (NIPS, 2004)

Numeric Domains with Summarized Dimensions. - Denis Gopan; Frank DiMaio; Nurit Dor; Thomas W. Reps; Shmuel Sagiv (TACAS, 2004)

Belief Propagation in Large, Highly Connected Graphs for 3D Part-Based Object Recognition. - Frank DiMaio; Jude W. Shavlik (ICDM, 2006)

A probabilistic approach to protein backbone tracing in electron density maps. - Frank DiMaio; Jude W. Shavlik; George N. Phillips (ISMB (Supplement of Bioinformatics), 2006)

Improved Methods for Template-Matching in Electron-Density Maps Using Spherical Harmonics. - Frank DiMaio; Ameet Soni; George N. Phillips; Jude W. Shavlik (BIBM, 2007)

Creating protein models from electron-density maps using particle-filtering methods. - Frank DiMaio; Dmitry A. Kondrashov; Eduard Bitto; Ameet Soni; Craig A. Bingman; George N. Phillips Jr.; Jude W. Shavlik (Bioinform., 2007)

Spherical-harmonic decomposition for molecular recognition in electron-density maps. - Frank DiMaio; Ameet Soni; George N. Phillips; Jude W. Shavlik (Int. J. Data Min. Bioinform., 2009)

Cryo-EM structure of the protein-conducting ERAD channel Hrd1 in complex with Hrd3. - Stefan Schoebel; Wei Mi; Alexander Stein; Sergey Ovchinnikov 001; Ryan E. Pavlovicz; Frank DiMaio; David Baker 001; Melissa G. Chambers; Huayou Su; Dongsheng Li; Tom A. Rapoport; Maofu Liao (Nat., 2017)

Programmable design of orthogonal protein heterodimers. - Zibo Chen; Scott E. Boyken; Mengxuan Jia; Florian Busch; David Flores-Solis; Matthew J. Bick; Peilong Lu; Zachary L. VanAernum; Aniruddha Sahasrabuddhe; Robert A. Langan; Sherry Bermeo; T. J. Brunette; et al. (Nat., 2019)

De novo protein design by citizen scientists. - Brian Koepnick; Jeff Flatten; Tamir Husain; Alex Ford; Daniel-Adriano Silva; Matthew J. Bick; Aaron Bauer 002; Gaohua Liu; Yojiro Ishida; Alexander Boykov; Roger D. Estep; Susan Kleinfelter; et al. (Nat., 2019)

Efficient consideration of coordinated water molecules improves computational protein-protein and protein-ligand docking discrimination. - Ryan E. Pavlovicz; Hahnbeom Park; Frank DiMaio (PLoS Comput. Biol., 2020)