Improved strategy in analytic surface calculation for molecular systems: Handling of singularities and computational efficiency. - Frank Eisenhaber; Patrick Argos (J. Comput. Chem., 1993)

The Double Cubic Lattice Method: Efficient Approaches to Numerical Integration of Surface Area and Volume and to Dot Surface Contouring of Molecular Assemblies. - Frank Eisenhaber; Philip Lijnzaad; Patrick Argos; Chris Sander; Michael Scharf (J. Comput. Chem., 1995)

Analysis of the position dependent amino acid probabilities and its application to the search for remote homologues. - Shamil R. Sunyaev; Igor V. Rodchenkov; Frank Eisenhaber; Eugene N. Kuznetsov (RECOMB, 1998)

Evaluation of human-readable annotation in biomolecular sequence databases with biological rule libraries. - Frank Eisenhaber; Peer Bork (Bioinform., 1999)

Taxonomy workbench. - Michael Wildpaner; Georg Schneider 001; Alexander Schleiffer; Frank Eisenhaber (Bioinform., 2001)

Reannotation of the CELO genome characterizes a set of previously unassigned open reading frames and points to novel modes of host interaction in avian adenoviruses. - Stefan Washietl; Frank Eisenhaber (BMC Bioinform., 2003)

Prediction of lipid posttranslational modifications and localization signals from protein sequences: big-, NMT and PTS1. - Frank Eisenhaber; Birgit Eisenhaber; Werner Kubina; Sebastian Maurer-Stroh; Georg Neuberger; Georg Schneider 001; Michael Wildpaner (Nucleic Acids Res., 2003)

TM or not TM: transmembrane protein prediction with low false positive rate using DAS-TMfilter. - Miklós Cserzo; Frank Eisenhaber; Birgit Eisenhaber; István Simon (Bioinform., 2004)

Proteins with two SUMO-like domains in chromatin-associated complexes: The RENi (Rad60-Esc2-NIP45) family. - Maria Novatchkova; Andreas Bachmair; Birgit Eisenhaber; Frank Eisenhaber (BMC Bioinform., 2005)

PhyloDome - visualization of taxonomic distributions of domains occurring in eukaryote protein sequence sets. - Maria Novatchkova; Michael Wildpaner; Dieter Schweizer; Frank Eisenhaber (Nucleic Acids Res., 2005)

Application of a sensitive collection heuristic for very large protein families: Evolutionary relationship between adipose triglyceride lipase (ATGL) and classic mammalian lipases. - Georg Schneider 001; Georg Neuberger; Michael Wildpaner; Sun Tian; Igor N. Berezovsky; Frank Eisenhaber (BMC Bioinform., 2006)

DOUTfinder - identification of distant domain outliers using subsignificant sequence similarity. - Maria Novatchkova; Georg Schneider 001; Richard Fritz; Frank Eisenhaber; Alexander Schleiffer (Nucleic Acids Res., 2006)

Towards Complete Sets of Farnesylated and Geranylgeranylated Proteins. - Sebastian Maurer-Stroh; Manfred Koranda; Wolfgang Benetka; Georg Schneider 001; Fernanda L. Sirota; Frank Eisenhaber (PLoS Comput. Biol., 2007)

ANNIE: integrated de novo protein sequence annotation. - Hong Sain Ooi; Chia Yee Kwoh; Michael Wildpaner; Fernanda L. Sirota; Birgit Eisenhaber; Sebastian Maurer-Stroh; Wing-Cheong Wong; Alexander Schleiffer; Frank Eisenhaber; Georg Schneider 001 (Nucleic Acids Res., 2009)

Brief Overview of Bioinformatics Activities in Singapore. - Frank Eisenhaber; Chee Keong Kwoh 001; See-Kiong Ng; Wing-Kin Sung; Limsoon Wong (PLoS Comput. Biol., 2009)

Is Lgi2 the Candidate Gene for Partial Epilepsy with Pericentral Spikes? - Vachiranee Limviphuvadh; Ling Ling Chua; Frank Eisenhaber; Sharmila Adhikari; Sebastian Maurer-Stroh (J. Bioinform. Comput. Biol., 2010)

More Than 1, 001 Problems with Protein Domain Databases: Transmembrane Regions, Signal Peptides and the Issue of Sequence Homology. - Wing-Cheong Wong; Sebastian Maurer-Stroh; Frank Eisenhaber (PLoS Comput. Biol., 2010)

The Janus-Faced E-Values of Hmmer2: Extreme Value Distribution or logistic Function? - Wing-Cheong Wong; Sebastian Maurer-Stroh; Frank Eisenhaber (J. Bioinform. Comput. Biol., 2011)

Tachyon search speeds up retrieval of similar sequences by several orders of magnitude. - Joshua Tan 001; Durga Kuchibhatla; Fernanda L. Sirota; Westley A. Sherman; Tobias Gattermayer; Chia Yee Kwoh; Frank Eisenhaber; Georg Schneider 001; Sebastian Maurer-Stroh (Bioinform., 2012)

A Decade after the First Full Human genome sequencing: when will We Understand our Own genome? - Frank Eisenhaber (J. Bioinform. Comput. Biol., 2012)

Beware of Moving targets: Reference proteome Content Fluctuates substantially over the Years. - Fernanda L. Sirota; Arsen O. Batagov; Georg Schneider 001; Birgit Eisenhaber; Frank Eisenhaber; Sebastian Maurer-Stroh (J. Bioinform. Comput. Biol., 2012)

Transmembrane helix: simple or complex. - Wing-Cheong Wong; Sebastian Maurer-Stroh; Georg Schneider 001; Frank Eisenhaber (Nucleic Acids Res., 2012)

International Conference on Genome Informatics (GIW 2013) in Singapore: introduction to the systems biology contributions. - Frank Eisenhaber; Wing-Kin Sung; Limsoon Wong (BMC Syst. Biol., 2013)

How bioinformatics influences health informatics: usage of biomolecular sequences, expression profiles and automated microscopic image analyses for clinical needs and public health. - Vladimir A. Kuznetsov; Hwee Kuan Lee; Sebastian Maurer-Stroh; Maria Judit Molnár; Sándor Pongor; Birgit Eisenhaber; Frank Eisenhaber (Health Inf. Sci. Syst., 2013)

The 24th International Conference on genome Informatics, Giw2013, in Singapore. - Frank Eisenhaber; Wing-Kin Sung; Limsoon Wong (J. Bioinform. Comput. Biol., 2013)

Automatic phylogenetic Classification of bacterial beta-Lactamase Sequences including Structural and Antibiotic substrate Preference Information. - Jianmin Ma; Frank Eisenhaber; Sebastian Maurer-Stroh (J. Bioinform. Comput. Biol., 2013)

Motif Discovery with Data Mining in 3D protein Structure Databases: Discovery, Validation and Prediction of the U-Shape zinc binding ("Huf-zinc") Motif. - Sebastian Maurer-Stroh; He Gao; Hao Han; Lies Baeten; Joost Schymkowitz; Frederic Rousseau 001; Louxin Zhang; Frank Eisenhaber (J. Bioinform. Comput. Biol., 2013)

A Simple Shortcut to Unsupervised Alignment-Free phylogenetic genome Groupings, even from Unassembled sequencing reads. - Sebastian Maurer-Stroh; Vithiagaran Gunalan; Wing-Cheong Wong; Frank Eisenhaber (J. Bioinform. Comput. Biol., 2013)

SPACER: server for predicting allosteric communication and effects of regulation. - Alexander Goncearenco; Simon Mitternacht; Taipang Yong; Birgit Eisenhaber; Frank Eisenhaber; Igor N. Berezovsky (Nucleic Acids Res., 2013)

On the necessity of dissecting sequence similarity scores into segment-specific contributions for inferring protein homology, function prediction and annotation. - Wing-Cheong Wong; Sebastian Maurer-Stroh; Birgit Eisenhaber; Frank Eisenhaber (BMC Bioinform., 2014)

Unix interfaces, Kleisli, bucandin structure, etc. - The heroic beginning of bioinformatics in Singapore. - Frank Eisenhaber (J. Bioinform. Comput. Biol., 2014)

10 years for the Journal of Bioinformatics and Computational Biology (2003-2013) - A retrospective. - Frank Eisenhaber; Westley Arthur Sherman (J. Bioinform. Comput. Biol., 2014)

Guest Editorial for the International Conference on Genome Informatics (GIW 2013). - Frank Eisenhaber; Wing-Kin Sung; Limsoon Wong (IEEE ACM Trans. Comput. Biol. Bioinform., 2014)

HPMV: Human protein mutation viewer - relating sequence mutations to protein sequence architecture and function changes. - Westley Arthur Sherman; Durga Kuchibhatla; Vachiranee Limviphuvadh; Sebastian Maurer-Stroh; Birgit Eisenhaber; Frank Eisenhaber (J. Bioinform. Comput. Biol., 2015)

AllerCatPro - prediction of protein allergenicity potential from the protein sequence. - Sebastian Maurer-Stroh; Nora L. Krutz; Petra S. Kern; Vithiagaran Gunalan; Minh N. Nguyen; Vachiranee Limviphuvadh; Frank Eisenhaber; G. Frank Gerberick (Bioinform., 2019)

In Memory of Vladimir B. Bajic (1952-2019). - Zhang Zhang 002; Jun Yu 004; Frank Eisenhaber; Xin Gao 001; Takashi Gojobori (Genom. Proteom. Bioinform., 2019)

Translational Informatics Management System (TIMS): Towards OMICS based clinical data management for long term curation of clinical studies. - Weihong Tay; Erwin Tantoso; Frank Eisenhaber; Wing-Cheong Wong (J. Open Source Softw., 2019)

Generalized metabolic flux analysis framework provides mechanism-based predictions of ophthalmic complications in type 2 diabetes patients. - Arsen O. Batagov; Rinkoo Dalan; Andrew Wu; Wenbin Lai; Colin S. Tan; Frank Eisenhaber (Health Inf. Sci. Syst., 2023)