TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences. - Hanno Teeling; Jost Waldmann; Thierry Lombardot; Margarete Bauer; Frank Oliver Glöckner (BMC Bioinform., 2004)

Graphical representation of ribosomal RNA probe accessibility data using ARB software package. - Yadhu Kumar; Ralf Westram; Sebastian Behrens; Bernhard Fuchs; Frank Oliver Glöckner; Rudolf Amann; Harald Meier; Wolfgang Ludwig (BMC Bioinform., 2005)

RibAlign: a software tool and database for eubacterial phylogeny based on concatenated ribosomal protein subunits. - Hanno Teeling; Frank Oliver Glöckner (BMC Bioinform., 2006)

Megx.net - database resources for marine ecological genomics. - Thierry Lombardot; Renzo Kottmann; Hauke Pfeffer; Michael Richter; Hanno Teeling; Christian Quast; Frank Oliver Glöckner (Nucleic Acids Res., 2006)

MetaLook: a 3D visualisation software for marine ecological genomics. - Thierry Lombardot; Renzo Kottmann; Gregory Giuliani; Andrea de Bono; Nans Addor; Frank Oliver Glöckner (BMC Bioinform., 2007)

MetaMine - A tool to detect and analyse gene patterns in their environmental context. - Uta Bohnebeck; Thierry Lombardot; Renzo Kottmann; Frank Oliver Glöckner (BMC Bioinform., 2008)

JCoast - A biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes. - Michael Richter; Thierry Lombardot; Ivaylo Kostadinov; Renzo Kottmann; Melissa Beth Duhaime; Jörg Peplies; Frank Oliver Glöckner (BMC Bioinform., 2008)

Applying graph theoretic approaches to microbial metagenomes: ecological perspectives on function. - Wolfgang Hankeln; Pier Luigi Buttigieg; Ivaylo Kostadinov; Renzo Kottmann; Pelin Yilmaz; Melissa Beth Duhaime; Frank Oliver Glöckner (BCB, 2010)

MetaBar - a tool for consistent contextual data acquisition and standards compliant submission. - Wolfgang Hankeln; Pier Luigi Buttigieg; Dennis Fink; Renzo Kottmann; Pelin Yilmaz; Frank Oliver Glöckner (BMC Bioinform., 2010)

Megx.net: integrated database resource for marine ecological genomics. - Renzo Kottmann; Ivaylo Kostadinov; Melissa Beth Duhaime; Pier Luigi Buttigieg; Pelin Yilmaz; Wolfgang Hankeln; Jost Waldmann; Frank Oliver Glöckner (Nucleic Acids Res., 2010)

Current opportunities and challenges in microbial metagenome analysis - a bioinformatic perspective. - Hanno Teeling; Frank Oliver Glöckner (Briefings Bioinform., 2012)

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes. - Elmar Pruesse; Jörg Peplies; Frank Oliver Glöckner (Bioinform., 2012)

Poseidon: An information retrieval and extraction system for metagenomic marine science. - Marcin Radom; Agnieszka Rybarczyk; Renzo Kottmann; Piotr Formanowicz; Marta Szachniuk; Frank Oliver Glöckner; Dietrich Rebholz-Schuhmann; Jacek Blazewicz (Ecol. Informatics, 2012)

Dinucleotide distance histograms for fast detection of rRNA in metatranscriptomic sequences. - Heiner Klingenberg; Robin Martinjak; Frank Oliver Glöckner; Rolf Daniel; Thomas Lingner; Peter Meinicke (GCB, 2013)

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. - Christian Quast; Elmar Pruesse; Pelin Yilmaz; Jan Gerken; Timmy Schweer; Pablo Yarza; Jörg Peplies; Frank Oliver Glöckner (Nucleic Acids Res., 2013)

Towards an Integrated Biodiversity and Ecological Research Data Management and Archiving Platform: The German Federation for the Curation of Biological Data (GFBio). - Michael Diepenbroek; Frank Oliver Glöckner; Peter Grobe; Anton Güntsch; Robert Huber; Birgitta König-Ries; Ivaylo Kostadinov; Jens Nieschulze; Bernhard Seeger; Robert Tolksdorf; Dagmar Triebel (GI-Jahrestagung, 2014)

The SILVA and "All-species Living Tree Project (LTP)" taxonomic frameworks. - Pelin Yilmaz; Laura Wegener Parfrey; Pablo Yarza; Jan Gerken; Elmar Pruesse; Christian Quast; Timmy Schweer; Jörg Peplies; Wolfgang Ludwig; Frank Oliver Glöckner (Nucleic Acids Res., 2014)

JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison. - Michael Richter; Ramon Rosselló-Mora; Frank Oliver Glöckner; Jörg Peplies (Bioinform., 2016)

SILVA tree viewer: interactive web browsing of the SILVA phylogenetic guide trees. - Alan Beccati; Jan Gerken; Christian Quast; Pelin Yilmaz; Frank Oliver Glöckner (BMC Bioinform., 2017)

A generally applicable lightweight method for calculating a value structure for tools and services in bioinformatics infrastructure projects. - Gerhard Mayer; Christian Quast; Janine Felden; Matthias Lange 001; Manuel Prinz; Alfred Pühler; Chris Lawerenz; Uwe Scholz; Frank Oliver Glöckner; Wolfgang Müller 001; Katrin Marcus; Martin Eisenacher (Briefings Bioinform., 2019)

Meta-omics data and collection objects (MOD-CO): a conceptual schema and data model for processing sample data in meta-omics research. - Gerhard Rambold; Pelin Yilmaz; Janno Harjes; Sabrina Klaster; Veronica Sanz; Anton Link; Frank Oliver Glöckner; Dagmar Triebel (Database J. Biol. Databases Curation, 2019)

Fast and accurate average genome size and 16S rRNA gene average copy number computation in metagenomic data. - Emiliano Pereira-Flores; Frank Oliver Glöckner; Antonio Fernandez-Guerra (BMC Bioinform., 2019)

The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR. - Daniel Wibberg; Bérénice Batut; Peter Belmann; Jochen Blom; Frank Oliver Glöckner; Björn A. Grüning; Nils Hoffmann; Nils Kleinbölting; René Rahn; Maja Rey; Uwe Scholz; Malvika Sharan; et al. (F1000Research, 2019)

The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications. - R. Henrik Nilsson; Karl-Henrik Larsson; Andy F. S. Taylor; Johan Bengtsson-Palme; Thomas S. Jeppesen; Dmitry Schigel; Peter Kennedy; Kathryn Picard; Frank Oliver Glöckner; Leho Tedersoo; Irja Saar; Urmas Kõljalg; et al. (Nucleic Acids Res., 2019)

An open-source GIS-enabled lookup service for Nagoya Protocol party information. - Hendrikje Seifert; Marc Weber; Frank Oliver Glöckner; Ivaylo Kostadinov (Database J. Biol. Databases Curation, 2020)

The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences. - Rachel Drysdale; Charles E. Cook; Robert Petryszak; Vivienne Baillie Gerritsen; Mary Barlow; Elisabeth Gasteiger; Franziska Gruhl; Jürgen Haas; Jerry Lanfear; Rodrigo Lopez; Nicole Redaschi; Heinz Stockinger; et al. (Bioinform., 2020)

Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases. - Gerhard Mayer; Wolfgang Müller 001; Karin Schork; Julian Uszkoreit; Andreas Weidemann; Ulrike Wittig; Maja Rey; Christian Quast; Janine Felden; Frank Oliver Glöckner; Matthias Lange 001; Daniel Arend; et al. (Briefings Bioinform., 2021)

Recommendations for connecting molecular sequence and biodiversity research infrastructures through ELIXIR. - Robert M. Waterhouse; Anne-Françoise Adam-Blondon; Donat Agosti; Petr Baldrian; Bachir Balech; Erwan Le Corre; Robert P. Davey; Henrik Lantz; Graziano Pesole; Christian Quast; Frank Oliver Glöckner; Niels Raes; et al. (F1000Research, 2021)

Towards a Research Data Commons in the German National Research Data Infrastructure NFDI: Vision, Governance, Architecture. - Michael Diepenbroek; Ivaylo Kostadinov; Bernhard Seeger; Frank Oliver Glöckner; Marius A. Dieckmann; Alexander Goesmann; Barbara Ebert; Sonja Schimmler; York Sure-Vetter (CoRDI, 2023)

Connecting National and International Data Infrastructures in Biodiversity Research The Case of NFDI4Biodiversity, a German Consortium for Biodiversity, Ecology and Environmental Data. - Barbara Ebert; Judith Sophie Engel; Ivaylo Kostadinov; Anton Güntsch; Frank Oliver Glöckner (CoRDI, 2023)