Prediction of protein stability changes upon one-point mutations using machine learning. - Frantisek Malinka (RACS, 2015)

Finding semantic patterns in omics data using concept rule learning with an ontology-based refinement operator. - Frantisek Malinka; Filip Zelezný; Jirí Kléma (BioData Min., 2020)

Batch alignment via retention orders for preprocessing large-scale multi-batch LC-MS experiments. - Frantisek Malinka; Ashkan Zareie; Jan Procházka; Radislav Sedlacek; Vendula Novosadova (Bioinform., 2022)