Estimating sufficient statistics in co-evolutionary analysis by mutual information. - Philipp Weil; Franziska Hoffgaard; Kay Hamacher (Comput. Biol. Chem., 2009)

Co-evolution in HIV Enzymes. - Patrick Boba; Philipp Weil; Franziska Hoffgaard; Kay Hamacher (BIOINFORMATICS, 2010)

Intra- and Inter-Molecular Coevolution: The Case of HIV1 Protease and Reverse Transcriptase. - Patrick Boba; Philipp Weil; Franziska Hoffgaard; Kay Hamacher (BIOSTEC (Selected Papers), 2010)

BioPhysConnectoR: Connecting Sequence Information and Biophysical Models. - Franziska Hoffgaard; Philipp Weil; Kay Hamacher (BMC Bioinform., 2010)

Is Your Permutation Algorithm Unbiased for n ≠ 2 m ? - Michael Waechter; Kay Hamacher; Franziska Hoffgaard; Sven Widmer; Michael Goesele (PPAM (1), 2011)

Distance dependency and minimum amino acid alphabets for decoy scoring potentials. - Susanne Pape; Franziska Hoffgaard; Mirjam Dür; Kay Hamacher (J. Comput. Chem., 2013)

The hpCADD NDDO Hamiltonian: Parametrization. - Heike Thomas; Matthias Hennemann; Patrick Kibies; Franziska Hoffgaard; Stefan Güssregen; Gerhard Hessler; Stefan M. Kast; Timothy Clark (J. Chem. Inf. Model., 2017)