Theoretical and experimental comparisons of gene expression indexes for oligonucleotide arrays. - William J. Lemon; Jeffrey J. T. Palatini; Ralf Krahe; Fred A. Wright (Bioinform., 2002)

Mega Weaver: A Simple Iterative Approach for BAC Consensus Assembly. - Daolong Wang; Mario Lauria; Bo Yuan; Fred A. Wright (APBC, 2004)

Significance analysis of functional categories in gene expression studies: a structured permutation approach. - William T. Barry; Andrew B. Nobel; Fred A. Wright (Bioinform., 2005)

Practical FDR-based sample size calculations in microarray experiments. - Jianhua Hu; Fei Zou; Fred A. Wright (Bioinform., 2005)

Simulating association studies: a data-based resampling method for candidate regions or whole genome scans. - Fred A. Wright; Hanwen Huang; Xiaojun Guan; Kevin Gamiel; Clark D. Jeffries; William T. Barry; Fernando Pardo-Manuel de Villena; Patrick F. Sullivan; Kirk C. Wilhelmsen; Fei Zou (Bioinform., 2007)

FastMap: Fast eQTL mapping in homozygous populations. - Daniel M. Gatti; Andrey A. Shabalin; Tieu-Chong Lam; Fred A. Wright; Ivan Rusyn; Andrew B. Nobel (Bioinform., 2009)

SAFEGUI: resampling-based tests of categorical significance in gene expression data made easy. - Daniel M. Gatti; Myroslav Sypa; Ivan Rusyn; Fred A. Wright; William T. Barry (Bioinform., 2009)

Discovering collectively informative descriptors from high-throughput experiments. - Clark D. Jeffries; William O. Ward; Diana O. Perkins; Fred A. Wright (BMC Bioinform., 2009)

An approximate Bayesian approach for quantitative trait loci estimation. - Yu-Ling Chang; Fei Zou; Fred A. Wright (Comput. Stat. Data Anal., 2010)

DiNAMIC: a method to identify recurrent DNA copy number aberrations in tumors. - Vonn Walter; Andrew B. Nobel; Fred A. Wright (Bioinform., 2011)

A powerful and flexible approach to the analysis of RNA sequence count data. - Yi-Hui Zhou; Kai Xia; Fred A. Wright (Bioinform., 2011)

seeQTL: a searchable database for human eQTLs. - Kai Xia; Andrey A. Shabalin; Shunping Huang; Vered Madar; Yi-Hui Zhou; Wei Wang 010; Fei Zou; Wei Sun 006; Patrick F. Sullivan; Fred A. Wright (Bioinform., 2012)

ToxPi GUI: an interactive visualization tool for transparent integration of data from diverse sources of evidence. - David M. Reif; Myroslav Sypa; Eric F. Lock; Fred A. Wright; Ander Wilson; Tommy Cathey; Richard S. Judson; Ivan Rusyn (Bioinform., 2013)

HT-eQTL: integrative expression quantitative trait loci analysis in a large number of human tissues. - Gen Li 004; Dereje Jima; Fred A. Wright; Andrew B. Nobel (BMC Bioinform., 2018)

ToxPi Graphical User Interface 2.0: Dynamic exploration, visualization, and sharing of integrated data models. - Skylar W. Marvel; Kimberly To; Fabian A. Grimm; Fred A. Wright; Ivan Rusyn; David M. Reif (BMC Bioinform., 2018)

Classification of estrogenic compounds by coupling high content analysis and machine learning algorithms. - Rajib Mukherjee; Burcu Beykal; Adam T. Szafran; Melis Onel; Fabio Stossi; Maureen G. Mancini; Dillon Lloyd; Fred A. Wright; Lan Zhou; Michael A. Mancini; Efstratios N. Pistikopoulos (PLoS Comput. Biol., 2020)

Control of false discoveries in grouped hypothesis testing for eQTL data. - Pratyaydipta Rudra; Yi-Hui Zhou; Andrew B. Nobel; Fred A. Wright (BMC Bioinform., 2024)