PipeAlign: a new toolkit for protein family analysis. - Frédéric Plewniak; Laurent Bianchetti; Yann Brelivet; Annaick Carles; Frédéric Chalmel; Odile Lecompte; Thiebaut Mochel; Luc Moulinier; Arnaud Muller; Jean Muller; Veronique Prigent; Raymond Ripp; et al. (Nucleic Acids Res., 2003)

GOAnno: GO annotation based on multiple alignment. - Frédéric Chalmel; Aurélie Lardenois; Julie Dawn Thompson; Jean Muller; José-Alain Sahel; Thierry Léveillard; Olivier Poch (Bioinform., 2005)

goCluster integrates statistical analysis and functional interpretation of microarray expression data. - Gunnar Wrobel; Frédéric Chalmel; Michael Primig (Bioinform., 2005)

PromAn: an integrated knowledge-based web server dedicated to promoter analysis. - Aurélie Lardenois; Frédéric Chalmel; Laurent Bianchetti; José-Alain Sahel; Thierry Léveillard; Olivier Poch (Nucleic Acids Res., 2006)

The Annotation, Mapping, Expression and Network (AMEN) suite of tools for molecular systems biology. - Frédéric Chalmel; Michael Primig (BMC Bioinform., 2008)

GermOnline 4.0 is a genomics gateway for germline development, meiosis and the mitotic cell cycle. - Aurélie Lardenois; Alexandre Gattiker; Olivier Collin; Frédéric Chalmel; Michael Primig (Database J. Biol. Databases Curation, 2010)

GPSy: a cross-species gene prioritization system for conserved biological processes - application in male gamete development. - Ramona Britto; Olivier Sallou; Olivier Collin; Grégoire Michaux; Michael Primig; Frédéric Chalmel (Nucleic Acids Res., 2012)

The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community. - Thomas A. Darde; Olivier Sallou; Emmanuelle Becker; Bertrand Evrard; Cyril Monjeaud; Yvan Le Bras; Bernard Jégou; Olivier Collin; Antoine D. Rolland; Frédéric Chalmel (Nucleic Acids Res., 2015)

PepPSy: a web server to prioritize gene products in experimental and biocuration workflows. - Olivier Sallou; Paula Duek Roggli; Thomas A. Darde; Olivier Collin; Lydie Lane; Frédéric Chalmel (Database J. Biol. Databases Curation, 2016)

TOXsIgN: a cross-species repository for toxicogenomic signatures. - Thomas A. Darde; Pierre Gaudriault; Rémi Beranger; Clément Lancien; Annaëlle Caillarec-Joly; Olivier Sallou; Nathalie Bonvallot; Cécile Chevrier; Séverine Mazaud-Guittot; Bernard Jégou; Olivier Collin; Emmanuelle Becker; et al. (Bioinform., 2018)

The ReproGenomics Viewer: a multi-omics and cross-species resource compatible with single-cell studies for the reproductive science community. - Thomas A. Darde; Estelle Lecluze; Aurélie Lardenois; Isabelle Stévant; Nathan Alary; Frank Tüttelmann; Olivier Collin; Serge Nef; Bernard Jégou; Antoine D. Rolland; Frédéric Chalmel (Bioinform., 2019)