Nemo: an evolutionary and population genetics programming framework. - Frédéric Guillaume; Jacques Rougemont (Bioinform., 2006)

quantiNemo: an individual-based program to simulate quantitative traits with explicit genetic architecture in a dynamic metapopulation. - Samuel Neuenschwander; Frédéric Hospital; Frédéric Guillaume; Jérôme Goudet (Bioinform., 2008)

Time-travelling pathogens and their risk to ecological communities. - Giovanni Strona; Corey J. A. Bradshaw; Pedro Cardoso; Nicholas Gotelli; Frédéric Guillaume; Federica Manca; Ville Mustonen; Luis Zaman (PLoS Comput. Biol., 2023)