Requêtes alternatives dans le contexte d'un entrepôt de données génomiques. - Christine Froidevaux; Frédéric Lemoine 002 (EGC, 2008)

GenoQuery: a new querying module for functional annotation in a genomic warehouse. - Frédéric Lemoine 002; Bernard Labedan; Christine Froidevaux (ISMB, 2008)

SynteBase/SynteView: a tool to visualize gene order conservation in prokaryotic genomes. - Frédéric Lemoine 002; Bernard Labedan; Olivier Lespinet (BMC Bioinform., 2008)

Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities. - Sarah Cohen Boulakia; Khalid Belhajjame; Olivier Collin; Jérôme Chopard; Christine Froidevaux; Alban Gaignard; Konrad Hinsen; Pierre Larmande; Yvan Le Bras; Frédéric Lemoine 002; Fabien Mareuil; Hervé Ménager; et al. (Future Gener. Comput. Syst., 2017)

Renewing Felsenstein's phylogenetic bootstrap in the era of big data. - Frédéric Lemoine 002; Jean-Baka Domelevo Entfellner; Eduan Wilkinson; Damien Correia; Miraine Dávila Felipe; Tulio de Oliveira; Olivier Gascuel (Nat., 2018)

NGPhylogeny.fr: new generation phylogenetic services for non-specialists. - Frédéric Lemoine 002; Damien Correia; Vincent Lefort; Olivia Doppelt-Azeroual; Fabien Mareuil; Sarah Cohen-Boulakia; Olivier Gascuel (Nucleic Acids Res., 2019)

SpliceLauncher: a tool for detection, annotation and relative quantification of alternative junctions from RNAseq data. - Raphaël Leman; Valentin Harter; Alexandre Atkinson; Grégoire Davy; Antoine Rousselin; Etienne Muller; Laurent Castéra; Frédéric Lemoine 002; Pierre de la Grange; Marine Guillaud-Bataille; Dominique Vaur; Sophie Krieger (Bioinform., 2020)

COVID-Align: accurate online alignment of hCoV-19 genomes using a profile HMM. - Frédéric Lemoine 002; Luc Blassel; Jakub Voznica; Olivier Gascuel (Bioinform., 2021)

Reprohackathons: promoting reproducibility in bioinformatics through training. - Thomas Cokelaer; Sarah Cohen-Boulakia; Frédéric Lemoine 002 (Bioinform., 2023)

Representing bioinformatics Nextflow workflows in RO-Crate: challenges and opportunities. - George Marchment; Marie Schmit; Clémence Sebe; Frédéric Lemoine 002; Hervé Ménager; Sarah Cohen-Boulakia (SWAT4HCLS, 2024)