Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. - Weizhong Li 002; Frederic Pio; Krzysztof Pawlowski; Adam Godzik (Bioinform., 2000)

Interaction profile-based protein classification of death domain. - Drew Lett; Michael Hsing; Frederic Pio (BMC Bioinform., 2004)

Computational Detection of TFBS in Apoptotic Protein Complexes. - Fred Peng; Frederic Pio (BIOCOMP, 2008)

Predicting protein complex core components through data integration. - Patrick Tan; Frederic Pio (BIOCOMP, 2009)

Predicting protein complexes by data integration of different types of interactions. - Powell Patrick Cheng Tan; Daryanaz Dargahi; Frederic Pio (Int. J. Comput. Biol. Drug Des., 2010)