SNPeffect: a database mapping molecular phenotypic effects of human non-synonymous coding SNPs. - Joke Reumers; Joost Schymkowitz; Jesper Ferkinghoff-Borg; Francois Stricher; Luis Serrano; Frederic Rousseau 001 (Nucleic Acids Res., 2005)

The FoldX web server: an online force field. - Joost Schymkowitz; Jesper Borg; Francois Stricher; Robby Nys; Frederic Rousseau 001; Luis Serrano (Nucleic Acids Res., 2005)

SNPeffect v2.0: a new step in investigating the molecular phenotypic effects of human non-synonymous SNPs. - Joke Reumers; Sebastian Maurer-Stroh; Joost Schymkowitz; Frederic Rousseau 001 (Bioinform., 2006)

PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes. - Lucía Conde; Juan M. Vaquerizas; Hernán Dopazo; Leonardo Arbiza; Joke Reumers; Frederic Rousseau 001; Joost Schymkowitz; Joaquín Dopazo (Nucleic Acids Res., 2006)

Joint annotation of coding and non-coding single nucleotide polymorphisms and mutations in the SNPeffect and PupaSuite databases. - Joke Reumers; Lucía Conde; Ignacio Medina; Sebastian Maurer-Stroh; Joost J. J. van Durme; Joaquín Dopazo; Frederic Rousseau 001; Joost Schymkowitz (Nucleic Acids Res., 2008)

Reconstruction of Protein Backbones from the BriX Collection of Canonical Protein Fragments. - Lies Baeten; Joke Reumers; Vicente Tur; François Stricher; Tom Lenaerts; Luis Serrano; Frederic Rousseau 001; Joost Schymkowitz (PLoS Comput. Biol., 2008)

Genome-Wide Prediction of SH2 Domain Targets Using Structural Information and the FoldX Algorithm. - Ignacio E. Sánchez; Pedro Beltrão; Francois Stricher; Joost Schymkowitz; Jesper Ferkinghoff-Borg; Frederic Rousseau 001; Luis Serrano (PLoS Comput. Biol., 2008)

Using structural bioinformatics to investigate the impact of non synonymous SNPs and disease mutations: scope and limitations. - Joke Reumers; Joost Schymkowitz; Frederic Rousseau 001 (BMC Bioinform., 2009)

Information theoretical quantification of cooperativity in signalling complexes. - Tom Lenaerts; Jesper Ferkinghoff-Borg; Joost Schymkowitz; Frederic Rousseau 001 (BMC Syst. Biol., 2009)

Accurate Prediction of DnaK-Peptide Binding via Homology Modelling and Experimental Data. - Joost J. J. van Durme; Sebastian Maurer-Stroh; Rodrigo Gallardo; Hannah Wilkinson; Frederic Rousseau 001; Joost Schymkowitz (PLoS Comput. Biol., 2009)

Modeling protein-peptide interactions using protein fragments: fitting the pieces? - Peter Vanhee; Francois Stricher; Lies Baeten; Erik Verschueren; Luis Serrano; Frederic Rousseau 001; Joost Schymkowitz (BMC Bioinform., 2010)

PepX: a structural database of non-redundant protein-peptide complexes. - Peter Vanhee; Joke Reumers; Francois Stricher; Lies Baeten; Luis Serrano; Joost Schymkowitz; Frederic Rousseau 001 (Nucleic Acids Res., 2010)

A graphical interface for the FoldX forcefield. - Joost J. J. van Durme; Javier Delgado Blanco; Francois Stricher; Luis Serrano; Joost Schymkowitz; Frederic Rousseau 001 (Bioinform., 2011)

BriX: a database of protein building blocks for structural analysis, modeling and design. - Peter Vanhee; Erik Verschueren; Lies Baeten; Francois Stricher; Luis Serrano; Frederic Rousseau 001; Joost Schymkowitz (Nucleic Acids Res., 2011)

An Evolutionary Trade-Off between Protein Turnover Rate and Protein Aggregation Favors a Higher Aggregation Propensity in Fast Degrading Proteins. - Greet De Baets; Joke Reumers; Javier Delgado Blanco; Joaquín Dopazo; Joost Schymkowitz; Frederic Rousseau 001 (PLoS Comput. Biol., 2011)

SNPeffect 4.0: on-line prediction of molecular and structural effects of protein-coding variants. - Greet De Baets; Joost J. J. van Durme; Joke Reumers; Sebastian Maurer-Stroh; Peter Vanhee; Joaquín Dopazo; Joost Schymkowitz; Frederic Rousseau 001 (Nucleic Acids Res., 2012)

Motif Discovery with Data Mining in 3D protein Structure Databases: Discovery, Validation and Prediction of the U-Shape zinc binding ("Huf-zinc") Motif. - Sebastian Maurer-Stroh; He Gao; Hao Han; Lies Baeten; Joost Schymkowitz; Frederic Rousseau 001; Louxin Zhang; Frank Eisenhaber (J. Bioinform. Comput. Biol., 2013)

Solubis: optimize your protein. - Greet De Baets; Joost J. J. van Durme; Rob van der Kant; Joost Schymkowitz; Frederic Rousseau 001 (Bioinform., 2015)

WALTZ-DB: a benchmark database of amyloidogenic hexapeptides. - Jacinte Beerten; Joost J. J. van Durme; Rodrigo Gallardo; Emidio Capriotti; Louise C. Serpell; Frederic Rousseau 001; Joost Schymkowitz (Bioinform., 2015)

PrionW: a server to identify proteins containing glutamine/asparagine rich prion-like domains and their amyloid cores. - Rafael Zambrano; Oscar Conchillo-Solé; Valentin Iglesias; Ricard Illa; Frederic Rousseau 001; Joost Schymkowitz; Raimon Sabate; Xavier Daura; Salvador Ventura (Nucleic Acids Res., 2015)

Increased Aggregation Is More Frequently Associated to Human Disease-Associated Mutations Than to Neutral Polymorphisms. - Greet De Baets; Loic Van Doorn; Frederic Rousseau 001; Joost Schymkowitz (PLoS Comput. Biol., 2015)

What Makes a Protein Sequence a Prion? - Raimon Sabate; Frederic Rousseau 001; Joost Schymkowitz; Salvador Ventura (PLoS Comput. Biol., 2015)

From Binding-Induced Dynamic Effects in SH3 Structures to Evolutionary Conserved Sectors. - Ana Zafra Ruano; Elisa Cilia; José R. Couceiro; Javier Ruiz Sanz; Joost Schymkowitz; Frederic Rousseau 001; Irene Luque; Tom Lenaerts (PLoS Comput. Biol., 2016)

Differential proteostatic regulation of insoluble and abundant proteins. - Reshmi Ramakrishnan; Bert Houben; Frederic Rousseau 001; Joost Schymkowitz (Bioinform., 2019)

Protein Homeostasis Database: protein quality control in E.coli. - Reshmi Ramakrishnan; Bert Houben; Lukasz Kreft; Alexander Botzki; Joost Schymkowitz; Frederic Rousseau 001 (Bioinform., 2020)

WALTZ-DB 2.0: an updated database containing structural information of experimentally determined amyloid-forming peptides. - Nikolaos N. Louros; Katerina Konstantoulea; Matthias De vleeschouwer; Meine Ramakers; Joost Schymkowitz; Frederic Rousseau 001 (Nucleic Acids Res., 2020)

In silico prediction of in vitro protein liquid-liquid phase separation experiments outcomes with multi-head neural attention. - Daniele Raimondi; Gabriele Orlando; Emiel Michiels; Donya Pakravan; Anna Bratek-Skicki; Ludo Van Den Bosch; Yves Moreau; Frederic Rousseau 001; Joost Schymkowitz (Bioinform., 2021)

StAmP-DB: a platform for structures of polymorphic amyloid fibril cores. - Nikolaos N. Louros; Rob van der Kant; Joost Schymkowitz; Frederic Rousseau 001 (Bioinform., 2022)

SNPeffect 5.0: large-scale structural phenotyping of protein coding variants extracted from next-generation sequencing data using AlphaFold models. - Kobe Janssen; Ramon Duran-Romaña; Guy Bottu; Mainak Guharoy; Alexander Botzki; Frederic Rousseau 001; Joost Schymkowitz (BMC Bioinform., 2023)